Browse Element(s) Details


Os.9021.2.S1_at

Description gb:AK121600.1
DB_XREF= gi:37991223
TID=Os.9021.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040K05, full insert sequence.
FL= gb:AK121600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0580011/11TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05810Os.51670.1.S1_a_at11/115+2884246..2891794ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os05g05820OsAffx.26748.1.S1_at11/115+2894019..2896161heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0045014biological_processnegative regulation of transcription by glucose
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9021.2.S1_at--878--5451Chr05:2871287..2871311 (25 bp)
GAACGATCCTGGAAGGTCATGCCCC
LOC_Os05g05800
Os.9021.2.S1_at--1098--2891Chr05:2871275..2871299 (25 bp)
AAGGTCATGCCCCTTGGATTCGCTT
LOC_Os05g05800
Os.9021.2.S1_at--1137--71Chr05:2871258..2871282 (25 bp)
ATTCGCTTCCGGATGAAACACCTGT
LOC_Os05g05800
Os.9021.2.S1_at--856--6991Chr05:2871224..2871248 (25 bp)
GTACGTCTACCGGACGATCGCAGGT
LOC_Os05g05800
Os.9021.2.S1_at--38--6391Chr05:2871209..2871233 (25 bp)
GATCGCAGGTCCAAGGTCCGACACA
LOC_Os05g05800
Os.9021.2.S1_at--957--1711Chr05:2871185..2871209 (25 bp)
ACCAGCCTGCGTCCAGATTGTGTAG
LOC_Os05g05800
Os.9021.2.S1_at--1094--10011Chr05:2871068..2871092 (25 bp)
TAGAATTGTTTCCTTCCAAGTAGAA
LOC_Os05g05800
Os.9021.2.S1_at--218--1411Chr05:2871027..2871051 (25 bp)
AGACTTGTCATGATCTCTACTCGGC
LOC_Os05g05800
Os.9021.2.S1_at--1115--9471Chr05:2871014..2871038 (25 bp)
TCTCTACTCGGCTACAAAACTGTTG
LOC_Os05g05800
Os.9021.2.S1_at--1113--6791Chr05:2870880..2870904 (25 bp)
GTTTTCTTAGCGTGTTTAGCACTTT
LOC_Os05g05800
Os.9021.2.S1_at--807--851Chr05:2870841..2870865 (25 bp)
ATGGCATCCATTTGTACTGTACTAG
LOC_Os05g05800
Target Sequence 
GAACGATCCTGGAAGGTCATGCCCCTTGGATTCGCTTCCGGATGAAACACCTGTTGNGNNACTGTACGTCTACCGGACGA
TCGCAGGTCCAAGGTCCGACACACCAGCCTGCGTCCAGATTGTGTAGGGGGCAGTATGTGCGGTATCGGTATGCGGGTGT
TATGGAGGTATTTATTTTCAATCTCGATTAGTACCTTCNAACACCTTCCTCGCATAACATAGAATTGTTTCCTTCCAAGT
AGAAAGGCTGATGGTTGGATAGACTTGTCATGATCTCTACTCGGCTACAAAACTGTTGCAGGTGTAGAATGAAAATTCAC
AGCCTTTTTCAGGTGTTAATAACTGTAGGAGGAGACTGGATGAATTACAGAAAACTACTAGATAGCATCATGAGAAAACT
TCGGTTTGTTTTCTTAGCGTGTTTAGCACTTTGTATGTATAAAAATATGGCATCCATTTGTACTGTACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9021.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis