Browse Element(s) Details


Os.53247.1.S1_at

Description gb:AK071562.1
DB_XREF= gi:32981585
TID=Os.53247.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023102P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023102P22, full insert sequence.
FL= gb:AK071562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0576011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed
LOC_Os05g05800Os.9021.2.S1_at11/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os05g05800Os.10149.1.S1_x_at1/115+2870514..2877110TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53247.1.S1_at--972--1951Chr05:2847873..2847897 (25 bp)
ACTGGGAATGCCACCGCCGGAGTGT
LOC_Os05g05760
Os.53247.1.S1_at--423--4491Chr05:2847888..2847912 (25 bp)
GCCGGAGTGTACAGATGGTCGCCAA
LOC_Os05g05760
Os.53247.1.S1_at--487--951Chr05:2848049..2848073 (25 bp)
AGGAACTGTGTCTACTTCGTCGAGC
LOC_Os05g05760
Os.53247.1.S1_at--351--8291Chr05:2848092..2848116 (25 bp)
GGCATTGGGCTATCGCCATGGATTT
LOC_Os05g05760
Os.53247.1.S1_at--38--2291Chr05:2848123..2848147 (25 bp)
AAATGCTTCGGAGCTGATTCCGCAT
LOC_Os05g05760
Os.53247.1.S1_at--222--8831Chr05:2848137..2848161 (25 bp)
TGATTCCGCATCCACAATTTCAGGA
LOC_Os05g05760
Os.53247.1.S1_at--832--5351Chr05:2848178..2848202 (25 bp)
GAAGATGGCAAATGCGCCGCCGATC
LOC_Os05g05760
Os.53247.1.S1_at--757--6871Chr05:2848216..2848240 (25 bp)
GTATTCCTGGTTTTGCCTCAAACAA
LOC_Os05g05760
Os.53247.1.S1_at--920--1531Chr05:2848251..2848275 (25 bp)
AGCATAAGTGACATGGCCTTCGCCA
LOC_Os05g05760
Os.53247.1.S1_at--228--8451Chr05:2848264..2848288 (25 bp)
TGGCCTTCGCCATCAATAATTGACA
LOC_Os05g05760
Os.53247.1.S1_at--1144--5671Chr05:2848294..2848318 (25 bp)
GACTTTACTGTATACTTCCTCTGTT
LOC_Os05g05760
Target Sequence 
ACTGGGAATGCCACCGCCGGAGTGTACAGATGGTCGCCAAGGTGTTCAGGATGGAGTGGGCGGCGGCGGCGGCGGACCTC
GAGCTCTCGCCGGTGACGGACCTCGGCGAGCACGCGCTCTTGCTGGGCCGCGGCGACGCGCTCGCGCTCTCCGCTGCGGA
GTTCCCCGCGATCAGGAGGAACTGTGTCTACTTCGTCGAGCACGACAATGCCCCGCATCGGCATTGGGCTATCGCCATGG
ATTTAGGGGCAAATGCTTCGGAGCTGATTCCGCATCCACAATTTCAGGAAGATGAGCCAAGCGAAGAAGATGGCAAATGC
GCCGCCGATCGCTCCTTGTTGCCGTATTCCTGGTTTTGCCTCAAACAACCCTTCTTCAAGCATAAGTGACATGGCCTTCG
CCATCAATAATTGACATCATTGACTTTACTGTATACTTCCTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis