Browse Element(s) Details


Os.48588.1.A1_at

Description gb:CR285451
DB_XREF= gi:44672017
DB_XREF=CR285451
CLONE=p664b07p3
TID=Os.48588.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48588 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_563897.1 (A.thaliana) putative Proline synthetase associated protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0574011/11Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05750OsAffx.26747.1.S1_at6/115+2845380..2845922hypothetical protein
LOC_Os05g05760Os.53247.1.S1_at11/115+2847042..2848340expressed protein
LOC_Os05g05770OsAffx.14558.1.S1_at8/115+2850753..2851717hypothetical protein
LOC_Os05g05780Os.2916.1.S1_at11/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05780Os.22820.1.A1_at1/115+2852343..2862799Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os05g05790Os.20667.1.S1_at10/115+2862898..2867493Double-stranded RNA binding motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0030170molecular_functionpyridoxal phosphate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48588.1.A1_at--291--2851Chr05:2841619..2841643 (25 bp)
AAGTCTTAGTCCAGGTCAACACCAG
LOC_Os05g05740
Os.48588.1.A1_at--676--1131Chr05:2841612..2841636 (25 bp)
AGTCCAGGTCAACACCAGTGGAGAA
LOC_Os05g05740
Os.48588.1.A1_at--867--9231Chr05:2841284..2841308 (25 bp)
TCCATCAGGATGTGTAGAGCTTGCA
LOC_Os05g05740
Os.48588.1.A1_at--471--6951Chr05:2841271..2841295 (25 bp)
GTAGAGCTTGCAAAGCATGTCAAAT
LOC_Os05g05740
Os.48588.1.A1_at--703--4991Chr05:2841257..2841281 (25 bp)
GCATGTCAAATTAGGCTGCCCGAAT
LOC_Os05g05740
Os.48588.1.A1_at--723--151Chr05:2841248..2841272 (25 bp)
ATTAGGCTGCCCGAATCTCGTGTTT
LOC_Os05g05740
Os.48588.1.A1_at--1071--4211Chr05:2841238..2841262 (25 bp)
CCGAATCTCGTGTTTTCTGGTTTGA
LOC_Os05g05740
Os.48588.1.A1_at--457--1071Chr05:2841206..2841230 (25 bp)
AGGGATGCTTGATTACTCCTCAACT
LOC_Os05g05740
Os.48588.1.A1_at--1040--1351Chr05:2841096..2841203 (25 bp)
AGAGAATTTCAAGGCACTGGCTAAT
LOC_Os05g05740
Os.48588.1.A1_at--242--10431Chr05:2840822..2840846 (25 bp)
TTATGCGATCAGGTTTTGCTGCGAC
LOC_Os05g05740
Os.48588.1.A1_at--1119--7871Chr05:2840811..2840835 (25 bp)
GGTTTTGCTGCGACATAGCATGCAT
LOC_Os05g05740
Target Sequence 
AAGTCTTAGTCCAGGTCAACACCAGTGGAGAAGAATCGAAATTTGGAGTAGATCCATCAGGATGTGTAGAGCTTGCAAAG
CATGTCAAATTAGGCTGCCCGAATCTCGTGTTTTCTGGTTTGATGACAATAGGGATGCTTGATTACTCCTCAACTCCAGA
GAATTTCAAGGCACTGGCTAATTGCCGGAAAGAGGTGTGCAAGGAGCTTGGAATTCCAGAGGAGCAGTGTGAACTGTCTA
TGGGCATGTCTGCTGATTTTGAGCAAGCGATTGAAATGGGAAGCACAAATGTTAGAGTTGGATCGACTATATTTGGTGCA
AGAGAATACCCAAAGAAGAATTAGGATGGTTATGCGATCAGGTTTTGCTGCGACATAGCATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48588.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis