Browse Element(s) Details


Os.7113.1.S1_at

Description gb:AK073947.1
DB_XREF= gi:32983970
TID=Os.7113.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.7113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073A13, full insert sequence.
FL= gb:AK061409.1 gb:AK073947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0570011/11Cullin-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05660OsAffx.10791.2.A1_x_at10/115+2788635..2795963PWWP domain containing protein, expressed
LOC_Os05g05670NANA5+2797545..27994721-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05680NANA5+2803342..28049521-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05690Os.52084.1.S1_at7/115+2808923..2811629expressed protein
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed
LOC_Os05g05710Os.22843.1.S1_at11/115+2823712..2829677EF hand family protein, expressed
LOC_Os05g05720Os.49925.2.S1_x_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05720Os.49925.2.S2_at11/115+2830871..2837288TPR Domain containing protein, expressed
LOC_Os05g05730NANA5+2837436..2837780Glutaredoxin-like family protein
LOC_Os05g05740Os.48588.1.A1_at11/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_x_at7/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed
LOC_Os05g05740OsAffx.26746.1.S1_at6/115+2840702..2843698Proline synthetase co-transcribed bacterial homolog protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7113.1.S1_at--507--1331Chr05:2813069..2813093 (25 bp)
AGAGTCGCAAAGTTATGGGCCATCA
LOC_Os05g05700
Os.7113.1.S1_at--900--6751Chr05:2812716..2813029 (25 bp)
GTTCAAGCCTGACTTCAAAGCCATC
LOC_Os05g05700
Os.7113.1.S1_at--215--6191Chr05:2812679..2812703 (25 bp)
GAGGACCTCATCACAAGGGATTACC
LOC_Os05g05700
Os.7113.1.S1_at--52--4851Chr05:2812579..2812603 (25 bp)
GCTAAGCTTTGCTGACTCGCGAGCT
LOC_Os05g05700
Os.7113.1.S1_at--586--5071Chr05:2812549..2812573 (25 bp)
GCAGCGGTGTCATGATGCTTCATCA
LOC_Os05g05700
Os.7113.1.S1_at--240--2591Chr05:2812525..2812549 (25 bp)
AACGATTTCGTGGTCATGCGGTGTT
LOC_Os05g05700
Os.7113.1.S1_at--1044--10051Chr05:2812486..2812510 (25 bp)
TATGTTACGATGTACCGCGGTCTTC
LOC_Os05g05700
Os.7113.1.S1_at--742--7811Chr05:2812437..2812461 (25 bp)
GGTCTCATTTTGTACATGCGTCATC
LOC_Os05g05700
Os.7113.1.S1_at--589--931Chr05:2812348..2812372 (25 bp)
AGGCACTTGGTCACTGTTAAGCGCA
LOC_Os05g05700
Os.7113.1.S1_at--931--5011Chr05:2812326..2812350 (25 bp)
GCAGGTGCTAACCATGCCGTTATTA
LOC_Os05g05700
Os.7113.1.S1_at--612--10771Chr05:2812269..2812293 (25 bp)
TTGGCACTCCTGAGTTAACCTGGAT
LOC_Os05g05700
Target Sequence 
AGAGTCGCAAAGTTATGGGCCATCAGCAGCTAGTTGCGGAATGTGTGGAGCAGCTCAGCCGCATGTTCAAGCCTGACTTC
AAAGCCATCAAGAAGCGAATCGAGGACCTCATCACAAGGGATTACCTGGAACGCGAGAAGGACAACGCTAATGTGTACAG
ATACCTGGCTTGATTGGTGGTTGATGCTAAGTCAAGAAACAGCTAAGCTTTGCTGACTCGCGAGCTTCGCTGCAGCGGTG
TCATGATGCTTCATCAACGATTTCGTGGTCATGCGGTGTTTTTTTGGGCATTTCTATGTTACGATGTACCGCGGTCTTCC
CTGGCTGCAGCACTGGCTGGTCTGGTCTCATTTTGTACATGCGTCATCGGATAGGAGAATGATGATAATCTCAAAGATAA
AACGGTAGCAGGGCATATCGGCTGGATAAGTGAGGCACTTGGTCACTGTTAAGCGCAGGTGCTAACCATGCCGTTATTAT
GCATATCATCAGTATGCTTTTATGTATGNNCTTGGCACTCCTGAGTTAACCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis