Browse Element(s) Details


OsAffx.10791.2.A1_x_at

Description tigr:9633.m00483
TID=OsAffx.10791.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PWWP domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0566010/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05600Os.11860.1.S1_at11/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05600Os.11860.1.S2_at10/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05610NANA5+2771689..2772394expressed protein
LOC_Os05g05620Os.50371.1.S1_x_at11/115+2774453..2775564glutathione S-transferase GSTF1, putative, expressed
LOC_Os05g05630OsAffx.19542.3.S1_x_at6/115+2776730..2781421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05640Os.57161.1.S1_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640OsAffx.26743.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640Os.57161.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05650Os.49454.1.S1_at11/115+2784188..2786017C2 domain containing protein, expressed
LOC_Os05g05660OsAffx.10791.2.A1_x_at10/115+2788635..2795963PWWP domain containing protein, expressed
LOC_Os05g05670NANA5+2797545..27994721-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05680NANA5+2803342..28049521-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05690Os.52084.1.S1_at7/115+2808923..2811629expressed protein
LOC_Os05g05700Os.7113.1.S1_at11/115+2812160..2818866Cullin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10791.2.A1_x_at--754--2771Chr05:2795370..2795394 (25 bp)
AAGAGCGCCACCAAGTCGGTCGGGT
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--517--1651Chr05:2795373..2795397 (25 bp)
AGCGCCACCAAGTCGGTCGGGTTCG
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--227--3171Chr05:2795381..2795405 (25 bp)
CAAGTCGGTCGGGTTCGCGCCACCG
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--694--391Chr05:2795524..2795548 (25 bp)
ATCAGCACCAGCCATACCAACCTCG
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--1072--4431Chr05:2795600..2795624 (25 bp)
GCCATTCTCCGTGCAGCAGCAGCAG
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--979--9291Chr05:2795650..2795674 (25 bp)
TCCGCCACAGCATCGACGGAATGCA
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--71--531NONE
ATCGACGGAATGCACCACCAGCTTC
NONE
OsAffx.10791.2.A1_x_at--148--4032Chr05:2795825..2795849 (25 bp)
CGTCACGCCGGCGTGGAAGAGAGGA
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--37--8211Chr05:2795889..2795913 (25 bp)
GGAATCGCCAAGATGGTGGAGCCAT
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--692--811Chr05:2795901..2795925 (25 bp)
ATGGTGGAGCCATTGACGGACAAGA
LOC_Os05g05660
OsAffx.10791.2.A1_x_at--469--7511Chr05:2795904..2795928 (25 bp)
GTGGAGCCATTGACGGACAAGAACG
LOC_Os05g05660
Target Sequence 
AAGAGCGCCACCAAGTCGGTCGGGTTCGCGCCACCGCCTCTCCAGCCGCCGGCGCGCCCGGCACAGCACCCCCACCTGCA
GCCGCCGGCGCGTCCAGCGCAGCAGCCTCCTCGCCCGCCGGTGACCCAGCCACTCCCTCCGCCGCCGCCTCTCCATCAGC
ACCAGCCATACCAACCTCGCCACACCGACGCGCTGCCGCTGCCGCTGCCGCCGCCACCGCCGCCGCCATTCTCCGTGCAG
CAGCAGCAGCTCCCTCCACCGCCACCATACCACCTCCGCCACAGCATCGACGGAATGCACCACCAGCTTCCCGGACCACC
GCTGCCGCCGTCGTACCAGCATCGCGCCGCCGGCGGCGTCGTCTTCCCCGGACAGCATCAGCAGCAGCCATACCGCCCCA
ACAACGACACCCAGCTCGGCCTCCCCGGCGCCGGCGCCGCCGCCGGTGACGTCACGCCGGCGTGGAAGAGAGGAGGGAGA
GAGTTCGACGAGGAGTTGATGAGGGTGATGCGGGGAATCGCCAAGATGGTGGAGCCATTGACGGACAAGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10791.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis