Browse Element(s) Details


Os.50371.1.S1_x_at

Description gb:AK120912.1
DB_XREF= gi:37990535
TID=Os.50371.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034E09, full insert sequence.
FL= gb:AK120912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0562011/11glutathione S-transferase GSTF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05580NANA5+2745546..2753325expressed protein
LOC_Os05g05590Os.27479.1.S1_at11/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05590OsAffx.25220.1.S1_at1/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05600Os.11860.1.S1_at11/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05600Os.11860.1.S2_at10/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05610NANA5+2771689..2772394expressed protein
LOC_Os05g05620Os.50371.1.S1_x_at11/115+2774453..2775564glutathione S-transferase GSTF1, putative, expressed
LOC_Os05g05630OsAffx.19542.3.S1_x_at6/115+2776730..2781421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05640Os.57161.1.S1_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640OsAffx.26743.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640Os.57161.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05650Os.49454.1.S1_at11/115+2784188..2786017C2 domain containing protein, expressed
LOC_Os05g05660OsAffx.10791.2.A1_x_at10/115+2788635..2795963PWWP domain containing protein, expressed
LOC_Os05g05670NANA5+2797545..27994721-aminocyclopropane-1-carboxylate oxidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50371.1.S1_x_at--119--2811Chr05:2774884..2774908 (25 bp)
AAGATCCCTGCCTTTGAGGACGGAG
LOC_Os05g05620
Os.50371.1.S1_x_at--146--5971Chr05:2774906..2775125 (25 bp)
GAGAAGTCACTCTCTTTGAGTCGCG
LOC_Os05g05620
Os.50371.1.S1_x_at--87--6111Chr05:2775118..2775142 (25 bp)
GAGTCGCGTGCAATTCAACGCTACG
LOC_Os05g05620
Os.50371.1.S1_x_at--926--2591Chr05:2775134..2775158 (25 bp)
AACGCTACGTGCTTCGCAATTACAA
LOC_Os05g05620
Os.50371.1.S1_x_at--495--2931Chr05:2775179..2775203 (25 bp)
AAGGCAACCTTGAGGAGTCGGCAAT
LOC_Os05g05620
Os.50371.1.S1_x_at--1105--9151Chr05:2775246..2775270 (25 bp)
TGCCATCTTCCACATTATCCGGGAG
LOC_Os05g05620
Os.50371.1.S1_x_at--1052--10411Chr05:2775260..2775284 (25 bp)
TTATCCGGGAGTGCGTCATCAAGCC
LOC_Os05g05620
Os.50371.1.S1_x_at--842--1131Chr05:2775380..2775404 (25 bp)
AGTCGGAGTACCTCGCCGGAGATTT
LOC_Os05g05620
Os.50371.1.S1_x_at--787--8031Chr05:2775397..2775421 (25 bp)
GGAGATTTCGTCAGCGTCGCCGACC
LOC_Os05g05620
Os.50371.1.S1_x_at--302--4371Chr05:2775467..2775491 (25 bp)
CCACGCTGGTGGAGTCGTGCACGAA
LOC_Os05g05620
Os.50371.1.S1_x_at--327--9411Chr05:2775481..2775505 (25 bp)
TCGTGCACGAACGTCAAAGCTGTTG
LOC_Os05g05620
Target Sequence 
AAGATCCCTGCCTTTGAGGACGGAGAAGTCACTCTCTTTGAGTCGCGTGCAATTCAACGCTACGTGCTTCGCAATTACAA
CAAACCGGATCTATTAAGAGAAGGCAACCTTGAGGAGTCGGCAATGGTGGACATGTGGATGGAGGTGGAGGCGCACCACT
ACGACCCTGCCATCTTCCACATTATCCGGGAGTGCGTCATCAAGCCGATGATCGGCGGCGGCGCCCGTGACCAGGCCATC
GTCGACGAGAACGTCGAGAAGCTGAGGAAGGTGCTGGAGGTGTACGAGCGGAGGTTGTCGGAGTCGGAGTACCTCGCCGG
AGATTTCGTCAGCGTCGCCGACCTGAACCACTTCCCCTACACCTACTACCTCATGACCACCGAGTACGCCACGCTGGTGG
AGTCGTGCACGAACGTCAAAGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50371.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis