Browse Element(s) Details


Os.49454.1.S1_at

Description gb:AK107944.1
DB_XREF= gi:32993153
TID=Os.49454.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-B04, full insert sequence.
FL= gb:AK107944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0565011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05590Os.27479.1.S1_at11/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05590OsAffx.25220.1.S1_at1/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05600Os.11860.1.S1_at11/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05600Os.11860.1.S2_at10/115+2764109..2770016ATA15 protein, putative, expressed
LOC_Os05g05610NANA5+2771689..2772394expressed protein
LOC_Os05g05620Os.50371.1.S1_x_at11/115+2774453..2775564glutathione S-transferase GSTF1, putative, expressed
LOC_Os05g05630OsAffx.19542.3.S1_x_at6/115+2776730..2781421retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g05640Os.57161.1.S1_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640OsAffx.26743.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05640Os.57161.1.S1_x_at11/115+2781709..2783003pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g05650Os.49454.1.S1_at11/115+2784188..2786017C2 domain containing protein, expressed
LOC_Os05g05660OsAffx.10791.2.A1_x_at10/115+2788635..2795963PWWP domain containing protein, expressed
LOC_Os05g05670NANA5+2797545..27994721-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05680NANA5+2803342..28049521-aminocyclopropane-1-carboxylate oxidase, putative, expressed
LOC_Os05g05690Os.52084.1.S1_at7/115+2808923..2811629expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49454.1.S1_at--1061--451Chr05:2784764..2784788 (25 bp)
ATCGTACCAGATCACCGACGAAGCC
LOC_Os05g05650
Os.49454.1.S1_at--1028--751Chr05:2784690..2784714 (25 bp)
ATGTCAGCGGGAAGGGCCTCCAGCT
LOC_Os05g05650
Os.49454.1.S1_at--537--8391Chr05:2784608..2784632 (25 bp)
GGCGCAGTCGCCAACGCTGGCGTAC
LOC_Os05g05650
Os.49454.1.S1_at--68--9931Chr05:2784511..2784535 (25 bp)
TACGGGTACGGCTATGGCCCAGCGC
LOC_Os05g05650
Os.49454.1.S1_at--1039--10851Chr05:2784346..2784370 (25 bp)
TTGGACGCCGGCATGAGCTGCTGAT
LOC_Os05g05650
Os.49454.1.S1_at--875--4771Chr05:2784330..2784354 (25 bp)
GCTGCTGATCCATCCGTACGTGCTG
LOC_Os05g05650
Os.49454.1.S1_at--246--1911Chr05:2784313..2784337 (25 bp)
ACGTGCTGCACGACTCTTGATGTAA
LOC_Os05g05650
Os.49454.1.S1_at--618--411Chr05:2784279..2784303 (25 bp)
ATCAGGTGTCACAATGGGCATTGCA
LOC_Os05g05650
Os.49454.1.S1_at--559--8291Chr05:2784263..2784287 (25 bp)
GGCATTGCACTGTTTGGCAGTGACA
LOC_Os05g05650
Os.49454.1.S1_at--50--411Chr05:2784231..2784255 (25 bp)
ATCATGGAAGTTTTTATCCCTTTCT
LOC_Os05g05650
Os.49454.1.S1_at--537--10151Chr05:2784217..2784241 (25 bp)
TATCCCTTTCTAATTTGCACATATG
LOC_Os05g05650
Target Sequence 
ATCGTACCAGATCACCGACGAAGCCGCCGAGCCGGCGTCCGCCGCCGGCGCCCGCGGCGCGTCGTCGACGCGGCATGTCA
GCGGGAAGGGCCTCCAGCTCAGCGCGATCACCGCGTACCCGTCGGCCGGGCGCCACAGCGGCGGCCGCCGCGGCGCGGCG
CAGTCGCCAACGCTGGCGTACCACCACGGCTCGCCCTACGGCGGCGGCGGCGGCGGCGCGCACGCGCAGCACCACCATCA
CCACCACCACCATTACGGGTACGGCTATGGCCCAGCGCCGTACGGCCATGGCGCGGCGAGTCACGGCGGTGGAGGAGGGA
TGGGGATGGGGGCGGGGCTCGGCATGGGGGTCGTCGGCGGCGCGGTCGCAGGGATGGTGCTCGCCGACATGCTCGCCGAC
GGCGAGATGGACACGCCCTTGGACGCCGGCATGAGCTGCTGATCCATCCGTACGTGCTGCACGACTCTTGATGTAATTAA
TAATAATCAGGTGTCACAATGGGCATTGCACTGTTTGGCAGTGACATGAATATATCATGGAAGTTTTTATCCCTTTCTAA
TTTGCACATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis