Browse Element(s) Details


OsAffx.14560.1.S1_at

Description tigr:9633.m00510
TID=OsAffx.14560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF410333 AT3g62730F26K9_160
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0592011/11Desiccation-related protein PCC13-62 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05860OsAffx.18625.1.S1_at10/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.3.S1_x_at4/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.2.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05860OsAffx.18625.4.S1_x_at1/115+2912843..2922402DNA-directed RNA polymerase II largest subunit, putative
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os05g05930NANA5+2947630..2948211hypothetical protein
LOC_Os05g05940Os.19814.1.S1_at11/115+2948872..2950773Rubber elongation factor protein containing protein, expressed
LOC_Os05g05950Os.9224.1.S1_at11/115+2951707..2956067chloroplast outer membrane protein, putative, expressed
LOC_Os05g05960OsAffx.10645.1.S1_at2/115+2961018..2961335hypothetical protein
LOC_Os05g05970OsAffx.26751.1.S1_at11/115+2963025..2963408hypothetical protein
LOC_Os05g05980OsAffx.14563.1.S1_at10/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05980OsAffx.26752.1.A1_at1/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14560.1.S1_at--695--1531Chr05:2945964..2945988 (25 bp)
AGCTCGGGTACCAGGAGGTGGGTCA
LOC_Os05g05920
OsAffx.14560.1.S1_at--664--1051Chr05:2945979..2946003 (25 bp)
AGGTGGGTCACATCAGGGCGATCAC
LOC_Os05g05920
OsAffx.14560.1.S1_at--55--7491Chr05:2945981..2946005 (25 bp)
GTGGGTCACATCAGGGCGATCACCC
LOC_Os05g05920
OsAffx.14560.1.S1_at--866--391Chr05:2945990..2946014 (25 bp)
ATCAGGGCGATCACCCAGTCCATGG
LOC_Os05g05920
OsAffx.14560.1.S1_at--31--6371Chr05:2945998..2946022 (25 bp)
GATCACCCAGTCCATGGGCGGGTTC
LOC_Os05g05920
OsAffx.14560.1.S1_at--233--8271Chr05:2946338..2946362 (25 bp)
GGCAGGACGCGGTGATAAGGATGAT
LOC_Os05g05920
OsAffx.14560.1.S1_at--153--7551Chr05:2946412..2946436 (25 bp)
GTGGCGGAGTTCACGCGGCGGATCT
LOC_Os05g05920
OsAffx.14560.1.S1_at--1054--9471Chr05:2946434..2946458 (25 bp)
TCTCCGAGTGGAGGAACGCGGCTTC
LOC_Os05g05920
OsAffx.14560.1.S1_at--917--7771Chr05:2946489..2946513 (25 bp)
GGTGCTCGACCGGAGGCAGGGCGCG
LOC_Os05g05920
OsAffx.14560.1.S1_at--94--8391Chr05:2946547..2946571 (25 bp)
GGCGACGACTCGCTCGGGTTCGCGC
LOC_Os05g05920
OsAffx.14560.1.S1_at--623--9531Chr05:2946599..2946623 (25 bp)
TCTACGGCTCGGGCAACGAGCAGGT
LOC_Os05g05920
Target Sequence 
AGCTCGGGTACCAGGAGGTGGGTCACATCAGGGCGATCACCCAGTCCATGGGCGGGTTCCCCCGCCCCGCGATCGACCTC
AGCGACGCCGTGTTCGCCGCGGTGATGGACGACGCCATGGCCACCCGCCTCGACCCCCCCTTCGACCCCTACGCCAGCAG
CGTCAACTTCCTCCTCGCCTCCTACATCCTCCCCCACATCACCGCCTCCGCCGCCGCGAGCATGCTGGCGGTGGAGGCGG
GGCAGGACGCGGTGATAAGGATGATGCTGTACGAGCGCGCCGACGAGGTGGTGGCGCCGTACAAGGGGAGGACGGTGGCG
GAGTTCACGCGGCGGATCTCCGAGTGGAGGAACGCGGCTTCGAGGTGCGGCGCCAAGGACGAGGGGGTGAAGGTGCTCGA
CCGGAGGCAGGGCGCGGAGCGGCGCACCGTCAGCAACATCCTCGGCGCCGGCGACGACTCGCTCGGGTTCGCGCGCACGC
CGGCGGAGGTGCTCCGCATCCTCTACGGCTCGGGCAACGAGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis