Browse Element(s) Details


Os.9224.1.S1_at

Description gb:AK102924.1
DB_XREF= gi:32988133
TID=Os.9224.1
CNT=44
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114D01, full insert sequence.
FL= gb:AK102924.1 gb:AK061885.1 gb:AK065647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0595011/11chloroplast outer membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05870Os.40360.1.S1_x_at1/115+2926575..2927207hypothetical protein
LOC_Os05g05880Os.52311.1.S1_at11/115+2930674..2934102retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05890Os.27691.1.S1_x_at1/115+2936678..2940565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.2.S1_x_at3/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05900Os.27691.1.S1_x_at1/115+2940818..2941777retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g05910NANA5+2942544..2944705retrotransposon protein, putative, unclassified, expressed
LOC_Os05g05920OsAffx.14560.1.S1_at11/115+2945594..2946690Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os05g05930NANA5+2947630..2948211hypothetical protein
LOC_Os05g05940Os.19814.1.S1_at11/115+2948872..2950773Rubber elongation factor protein containing protein, expressed
LOC_Os05g05950Os.9224.1.S1_at11/115+2951707..2956067chloroplast outer membrane protein, putative, expressed
LOC_Os05g05960OsAffx.10645.1.S1_at2/115+2961018..2961335hypothetical protein
LOC_Os05g05970OsAffx.26751.1.S1_at11/115+2963025..2963408hypothetical protein
LOC_Os05g05980OsAffx.14563.1.S1_at10/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05980OsAffx.26752.1.A1_at1/115+2965142..2969147DNA directed RNA polymerase, 7 kDa subunit family protein
LOC_Os05g05990OsAffx.25962.1.S1_at11/115+2976416..2981049transposon protein, putative, Mutator sub-class
LOC_Os05g05990OsAffx.14185.1.S1_x_at1/115+2976416..2981049transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0004888molecular_functiontransmembrane receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9224.1.S1_at--785--891Chr05:2952232..2952256 (25 bp)
AGGCGACACCGCTTATGGAGCTAAC
LOC_Os05g05950
Os.9224.1.S1_at--109--8071Chr05:2952216..2952240 (25 bp)
GGAGCTAACTTGGAGGCACGCCTGA
LOC_Os05g05950
Os.9224.1.S1_at--410--3251Chr05:2952158..2952182 (25 bp)
CAACCCTGGGTCTTTCTTTGATGAA
LOC_Os05g05950
Os.9224.1.S1_at--48--3691Chr05:2952143..2952167 (25 bp)
CTTTGATGAAGTGGCGCCGAGACCT
LOC_Os05g05950
Os.9224.1.S1_at--779--1371Chr05:2952124..2952148 (25 bp)
AGACCTTGCTCTCGGTGCGAATTTG
LOC_Os05g05950
Os.9224.1.S1_at--131--10731Chr05:2952102..2952126 (25 bp)
TTGCAGTCCCAGTTCTCGATTGGAA
LOC_Os05g05950
Os.9224.1.S1_at--909--2871Chr05:2952034..2952058 (25 bp)
AAGTGGCCAGATCACTGTCAGGACA
LOC_Os05g05950
Os.9224.1.S1_at--386--8731Chr05:2952019..2952043 (25 bp)
TGTCAGGACAAGCACCTCGGAGCAG
LOC_Os05g05950
Os.9224.1.S1_at--952--3431Chr05:2951991..2952015 (25 bp)
CAGATCGCGCTGTTGGGTCTTATCC
LOC_Os05g05950
Os.9224.1.S1_at--895--10631Chr05:2951919..2951943 (25 bp)
TTCGCCTATTAGCTTCGCATCAAGA
LOC_Os05g05950
Os.9224.1.S1_at--631--2451Chr05:2951892..2951916 (25 bp)
AACAATTTACTCATGTCGGCTGCGC
LOC_Os05g05950
Target Sequence 
AGGCGACACCGCTTATGGAGCTAACTTGGAGGCACGCCTGAAAGACAAAGATTATCCGATTGGCCAGTCCCTGTCAACCC
TGGGTCTTTCTTTGATGAAGTGGCGCCGAGACCTTGCTCTCGGTGCGAATTTGCAGTCCCAGTTCTCGATTGGAAGGGGC
TCGAAGATGGNGGTTCGTCTTGGATTGAATAACAAACTAAGTGGCCAGATCACTGTCAGGACAAGCACCTCGGAGCAGGT
CCAGATCGCGCTGTTGGGTCTTATCCCAGTTGCAGCCTCCATTTACAGGAGCTTCAGGCCCAGCGAACCCTCCTTCGCCT
ATTAGCTTCGCATCAAGATGAACAATTTACTCATGTCGGCTGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis