Browse Element(s) Details


Os.33373.1.S1_x_at

Description gb:AK100804.1
DB_XREF= gi:32986013
TID=Os.33373.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1158C05.7 (B1158C05.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121K22, full insert sequence.
FL= gb:AK100804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4406911/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44040Os.18001.3.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.2.S1_x_at11/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.3.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.18001.1.S1_at10/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44040Os.27520.2.S1_x_at1/111+25553722..25560621O-acetyltransferase, putative, expressed
LOC_Os01g44050Os.4863.1.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44050Os.4863.2.S1_at11/111+25561556..25565013Tetrapyrrole Methylases family protein, expressed
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44090Os.36473.1.S1_at11/111+25598549..25600354expressed protein
LOC_Os01g44100NANA1+25605750..25606644hypothetical protein
LOC_Os01g44110Os.35858.2.S1_x_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.2.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.1.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44120Os.12043.1.S1_at11/111+25615240..25616005expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33373.1.S1_x_at--395--4251Chr01:25584521..25584545 (25 bp)
CCGTCCTGCCCAAGTTCTACATGGA
LOC_Os01g44069
Os.33373.1.S1_x_at--523--9711Chr01:25584551..25584575 (25 bp)
TCAACGCGCAGGTGTACAGCCGCCT
LOC_Os01g44069
Os.33373.1.S1_x_at--523--8991Chr01:25584641..25584665 (25 bp)
TGAAGGAGTACATGGCCGCCGACGT
LOC_Os01g44069
Os.33373.1.S1_x_at--333--8391Chr01:25584706..25584730 (25 bp)
GGCCGCTACTTCACCGGGATGCTGT
LOC_Os01g44069
Os.33373.1.S1_x_at--1117--3651Chr01:25584714..25584738 (25 bp)
CTTCACCGGGATGCTGTGTGGGCCA
LOC_Os01g44069
Os.33373.1.S1_x_at--761--3911Chr01:25584755..25584779 (25 bp)
CGGCGCTGAAGCACAAGGCCCTGCA
LOC_Os01g44069
Os.33373.1.S1_x_at--252--2231Chr01:25584767..25584791 (25 bp)
ACAAGGCCCTGCAGGCAGAGGCGTT
LOC_Os01g44069
Os.33373.1.S1_x_at--737--10831Chr01:25584790..25584814 (25 bp)
TTGGGAACGGACAACGCCATGGCTG
LOC_Os01g44069
Os.33373.1.S1_x_at--69--2611Chr01:25584802..25584826 (25 bp)
AACGCCATGGCTGACGTGGCCGTCG
LOC_Os01g44069
Os.33373.1.S1_x_at--430--2131Chr01:25589826..25589850 (25 bp)
ACAGGTACCCGAAGCCGCTCATCTT
LOC_Os01g44069
Os.33373.1.S1_x_at--62--9111Chr01:25589961..25589985 (25 bp)
TGCTCCCCTACAAGATCAGCTTCGG
LOC_Os01g44069
Target Sequence 
CCGTCCTGCCCAAGTTCTACATGGAGGGGCTCAACGCGCAGGTGTACAGCCGCCTCTGGCTGCCGGCGAGGAGGAAGGTG
GTGGTGACGGGCGCGCCGAGGGTGATGGTGGNGTGGTTCTTGAAGGAGTACATGGCCGCCGACGTGGTGGTCGGCGGCGA
GCTGCATGTTGTTAGGGTTGGTCGCGGCCGCTACTTCACCGGGATGCTGTGTGGGCCAGGAGGATCGGCGGCGCCGGCGC
TGAAGCACAAGGCCCTGCAGGCAGAGGCGTTGGGAACGGACAACGCCATGGCTGACGTGGCCGTCGTCGGGAACGCCAGC
CAGCTCGACCACCCCTGCNTNNNNNNNTNNNNGGNNNNTNNNNNCGTNNNNNNGNNNNNNACNANNANNNNNCGGCTGCC
GCGGGACAGGTACCCGAAGCCGCTCATCTTCCACGACGGCCGCCTCGCCTTCCTCCCGACCCCCTCCGCCGCGCTCGCTT
TCTTCCTCTTCCTCCCCCTCGGCGTCATCCTCTCCGTCATCCGCATCTCCATCGGCATCCTGCTCCCCTACAAGATCAGC
TTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33373.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis