Browse Element(s) Details


Os.35858.1.S1_at

Description gb:AK065494.1
DB_XREF= gi:32975512
TID=Os.35858.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to protein kinase (B1158C05.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025I12, full insert sequence.
FL= gb:AK065494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4411011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44090Os.36473.1.S1_at11/111+25598549..25600354expressed protein
LOC_Os01g44100NANA1+25605750..25606644hypothetical protein
LOC_Os01g44110Os.35858.2.S1_x_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.2.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.1.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44120Os.12043.1.S1_at11/111+25615240..25616005expressed protein
LOC_Os01g44130OsAffx.9099.1.S1_x_at10/111+25618186..25624920Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g44140NANA1+25628529..25629251hypothetical protein
LOC_Os01g44150OsAffx.13786.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150OsAffx.22699.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_x_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_at1/111+25630989..25636728retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35858.1.S1_at--407--6071Chr01:25612951..25612975 (25 bp)
GAGTTCATAAACCTACGATCCATCC
LOC_Os01g44110
Os.35858.1.S1_at--404--6371Chr01:25612967..25612991 (25 bp)
GATCCATCCTGAGTACTCATCATCA
LOC_Os01g44110
Os.35858.1.S1_at--602--9591Chr01:25613027..25613051 (25 bp)
TCACCAATGTGGTTACCGTTCTGAT
LOC_Os01g44110
Os.35858.1.S1_at--1035--7891Chr01:25613169..25613193 (25 bp)
GGTTCTTTGGATGACCATTCTTGTG
LOC_Os01g44110
Os.35858.1.S1_at--697--10551Chr01:25613186..25613210 (25 bp)
TTCTTGTGATCCACGAAGCTCGTTG
LOC_Os01g44110
Os.35858.1.S1_at--1059--5391Chr01:25613200..25613224 (25 bp)
GAAGCTCGTTGGGTGTATGCATGAC
LOC_Os01g44110
Os.35858.1.S1_at--295--2711Chr01:25613255..25613279 (25 bp)
AAGCTTTCAGTTTTCACTTGCTCCT
LOC_Os01g44110
Os.35858.1.S1_at--278--2071Chr01:25613270..25613294 (25 bp)
ACTTGCTCCTCTGTTTGCAGACTTG
LOC_Os01g44110
Os.35858.1.S1_at--896--10311Chr01:25613330..25613354 (25 bp)
TTTCTCTCCCCTTGTATTGGTAGAA
LOC_Os01g44110
Os.35858.1.S1_at--192--10011Chr01:25613350..25613374 (25 bp)
TAGAATCAGCTACACGGTTCATTTG
LOC_Os01g44110
Os.35858.1.S1_at--786--7891Chr01:25613365..25613389 (25 bp)
GGTTCATTTGACCAGGCCATGTCAG
LOC_Os01g44110
Target Sequence 
GAGTTCATAAACCTACGATCCATCCTGAGTACTCATCATCATCATCATTGATCAGCCTGGGATATGATGTTATTGATCAC
CAATGTGGTTACCGTTCTGATAGGGAGATGATTGGTAGNTAAAACCTAGCCATTAGNTCGAGTAGTAGCNTTATTGGAGG
GAAGGATTTCATGGTTCTTTTGTTGTTCAAAGTTTTTTGTGCTGTATAGGTATATGTTGGTTCTTTGGATGACCATTCTT
GTGATCCACGAAGCTCGTTGGGTGTATGCATGACACNGGATCATTCATTGGGTTTATGTGCTGTTAAGCTTTCAGTTTTC
ACTTGCTCCTCTGTTTGCAGACTTGCAGTGTTGTGCATGAGGGAATGGTGTTATCATCAGTTTCTCTCCCCTTGTATTGG
TAGAATCAGCTACACGGTTCATTTGACCAGGCCATGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis