Browse Element(s) Details


OsAffx.9099.1.S1_x_at

Description gb:NM_192943.1
DB_XREF= gi:34912969
GEN=B1158C05.12
TID=OsAffx.9099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative aspartic protease (B1158C05.12), mRNA.
PROD=putative aspartic protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4413010/11Aspartic proteinase oryzasin-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44090Os.36473.1.S1_at11/111+25598549..25600354expressed protein
LOC_Os01g44100NANA1+25605750..25606644hypothetical protein
LOC_Os01g44110Os.35858.2.S1_x_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.2.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.1.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44120Os.12043.1.S1_at11/111+25615240..25616005expressed protein
LOC_Os01g44130OsAffx.9099.1.S1_x_at10/111+25618186..25624920Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g44140NANA1+25628529..25629251hypothetical protein
LOC_Os01g44150OsAffx.13786.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150OsAffx.22699.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_x_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44160OsAffx.23654.1.S1_at8/111+25639254..25639640hypothetical protein
LOC_Os01g44170Os.40235.1.S1_at11/111+25643963..25650348hypothetical protein
LOC_Os01g44170Os.25526.1.S1_at1/111+25643963..25650348hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9099.1.S1_x_at--625--2811Chr01:25620993..25621151 (25 bp)
AAGATAAGACACCACCAGCACAAGT
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--822--3171Chr01:25621161..25621185 (25 bp)
AATTGGGCTCTGCAAATCCGATGGA
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--376--5771Chr01:25621352..25621376 (25 bp)
GACGAAGTTTCTGACGCTACGTGTA
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--1069--9751Chr01:25621532..25621552 (21 bp)
TAATCAGCTCTGTGGCAACATGCCT
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--1116--8511Chr01:25621572..25621596 (25 bp)
TGGACTGCAGACACATCGGTCACTT
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--643--4511Chr01:25621597..25621621 (25 bp)
GCCGAACGTCGCATTCAGCATAGGT
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--1031--1351Chr01:25621625..25621649 (25 bp)
AGAGCATTTGAGCTGACACCGGAGC
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--661--6011Chr01:25623754..25623778 (25 bp)
GAGAGGGATTCCTGGCTCATTGTAT
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--302--6571Chr01:25623784..25623808 (25 bp)
GATTCACGGCTTTAGACATTCCTCC
LOC_Os01g44130
OsAffx.9099.1.S1_x_at--134--3111NONE
AATAGGTCCTCTCTGGATATTAGGC
NONE
OsAffx.9099.1.S1_x_at--1086--8291Chr01:25624860..25624884 (25 bp)
GGCTTATCACACCATCTTTGACTAT
LOC_Os01g44130
Target Sequence 
AAGATAAGACACCACCAGCACAAGTGTGTTCCAAAATTGGGCTCTGCAAATCCGATGGAGCGCATGGAATTAGCGATGGC
ATTGAGAGTGTGCTGGGTGAGACGCACAAATCTGCAGACGAAGTTTCTGACGCTACGTGTAATGCATGTGAGATGGCAGT
TACATGGATGCAGAGCGAATTTGTTCAGAACCATACAAAGGAGGGCAAGTTGGAGTATGCTAATCAGCTCTGTGGCAACA
TGCCTAGCCCAGTAGGATCATATGTGGACTGCAGACACATCGGTCACTTGCCGAACGTCGCATTCAGCATAGGTGGAAGA
GCATTTGAGCTGACACCGGAGCAGTACATTCTCAAATTTGGAGAGGGATTCCTGGCTCATTGTATGAGTGGATTCACGGC
TTTAGACATTCCTCCTCCAATAGGTCCTCTCTGGATATTAGGCGATGTGTTTATGGGGGCTTATCACACCATCTTTGACT
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9099.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis