Browse Element(s) Details


Os.52561.1.S1_x_at

Description gb:AK067999.1
DB_XREF= gi:32978017
TID=Os.52561.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52561 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129F06, full insert sequence.
FL= gb:AK067999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4894011/11Arabinose kinase, putative, expressed
LOC_Os01g441501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48889NANA6+29601567..29601998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48900NANA6+29603899..29610071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48909NANA6+29610919..29611350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48920OsAffx.28179.1.S1_at11/116+29615225..29618291hypothetical protein
LOC_Os06g48930Os.50284.1.S1_at11/116+29619545..29621473expressed protein
LOC_Os06g48940Os.52561.1.S1_x_at11/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940Os.52561.1.S1_at11/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940Os.11681.1.S1_at9/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940OsAffx.12844.1.S1_at1/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48950Os.22271.2.S1_x_at10/116+29656481..29664197Auxin response factor family protein

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Gene Ontology Classification
GO idTypeName
GO:0019566biological_processarabinose metabolism
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52561.1.S1_x_at--692--5571Chr06:29632589..29632613 (25 bp)
GAAAGTCCTAGTCTATTTGGTGCTA
LOC_Os06g48940
Os.52561.1.S1_x_at--968--10651Chr06:29632630..29632654 (25 bp)
TTCCGGAGGCTCAGTTTGCGTCATG
LOC_Os06g48940
Os.52561.1.S1_x_at--593--7031Chr06:29632873..29632897 (25 bp)
GTACAAGGCAGCAACTGGCTACCTA
LOC_Os06g48940
Os.52561.1.S1_x_at--146--3491Chr06:29632923..29632947 (25 bp)
CAGGCGCTGCCAAATTCGGCTACCT
LOC_Os06g48940
Os.52561.1.S1_x_at--57--3791Chr06:29632966..29632990 (25 bp)
CTCGTCACCAATTGCTGCCAAATGA
LOC_Os06g48940
Os.52561.1.S1_x_at--389--6611Chr06:29632994..29633018 (25 bp)
GATTGGCTTTCAGTTTGTCGTGCAA
LOC_Os06g48940
Os.52561.1.S1_x_at--1072--8711Chr06:29633009..29633033 (25 bp)
TGTCGTGCAACTCGGTCTGTCAATG
LOC_Os06g48940
Os.52561.1.S1_x_at--951--2411Chr06:29633057..29633081 (25 bp)
AAAACATTGTGCCATCCTGTCAACT
LOC_Os06g48940
Os.52561.1.S1_x_at--415--6531Chr06:29633140..29633164 (25 bp)
GATTTCGTGTGACAGCCAATTCGTT
LOC_Os06g48940
Os.52561.1.S1_x_at--53--6791Chr06:29633247..29633271 (25 bp)
GTTAGAACCCAATTGGATCCATGCC
LOC_Os06g48940
Os.52561.1.S1_x_at--888--7973Chr06:29633261..29633285 (25 bp)
GGATCCATGCCAATGCAATTATTTT
LOC_Os06g48940
Target Sequence 
GAAAGTCCTAGTCTATTTGGTGCTAAGATTACCGGAGGAGGTTCCGGAGGCTCAGTTTGCGTCATGGGGAAAAACTGCCT
CAAAAGCAGTGAGGAGATCATCGAGATTCAGCAAAGGTACAAGGCAGCAACTGGCTACCTACCAATCCTATTCGATGGAT
CATCCCCAGGCGCTGCCAAATTCGGCTACCTGAAGATCCGACGACGCCCCTCGTCACCAATTGCTGCCAAATGAAGAGAT
TGGCTTTCAGTTTGTCGTGCAACTCGGTCTGTCAATGAGTTTCATCAAGACCGTTGATTGAAAACATTGTGCCATCCTGT
CAACTGCAATTGTTCGTTCATTGATTAATTGCTCCATTCTGGGGCACAGTCGTTGCAATTGTAGATTTCGTGTGACAGCC
AATTCGTTGGGTTGCTTTCGTGTGGAACTGTGAAAATGTGAAATACTGGATTCTTCTGAAAGGTTAGTGGTTTGGTACTT
TGGTTTGTGGGTTAGAACCCAATTGGATCCATGCCAATGCAATTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52561.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis