Browse Element(s) Details


Os.22271.2.S1_x_at

Description gb:CB621018
DB_XREF= gi:29616006
DB_XREF=OSIIEa06K02.r
CLONE=OSIIEa06K02
TID=Os.22271.2
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.22271 (NCBI UniGene Cluster)
UG_TITLE=OsARF7a mRNA for auxin response factor 7a, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4895010/11Auxin response factor family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48940Os.52561.1.S1_x_at11/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940Os.52561.1.S1_at11/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940Os.11681.1.S1_at9/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940OsAffx.12844.1.S1_at1/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48950Os.22271.2.S1_x_at10/116+29656481..29664197Auxin response factor family protein
LOC_Os06g48960Os.6825.1.S1_at11/116+29664348..29666374avirulence-responsive protein, putative, expressed
LOC_Os06g48970Os.8912.1.S1_at11/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48970Os.50339.1.S1_at1/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48980Os.53495.1.S1_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48980Os.53495.1.S1_x_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22271.2.S1_x_at--419--8191Chr06:29663372..29663396 (25 bp)
GGAAGCTCGTTTACAAGGATCATGA
LOC_Os06g48950
Os.22271.2.S1_x_at--705--2791Chr06:29663396..29663420 (25 bp)
AAGATGACATCCTACTTCTTGGCGA
LOC_Os06g48950
Os.22271.2.S1_x_at--327--10551NONE
TTCTTGGCGACGACCCATGGGAGGA
NONE
Os.22271.2.S1_x_at--578--992Chr10:9233043..9233067 (23 bp)
AGGATCCTTTCACCTCAAGAAGTTC
NONE
Os.22271.2.S1_x_at--337--5251Chr06:29663699..29663723 (25 bp)
GAATCAGGCCTGCAGCAGCTCAGAC
LOC_Os06g48950
Os.22271.2.S1_x_at--565--3791Chr06:29663743..29663767 (25 bp)
CTCGCTGCGATCAGAACTCCGGTAA
LOC_Os06g48950
Os.22271.2.S1_x_at--313--9271Chr06:29663760..29663784 (25 bp)
TCCGGTAACCCTTCCAATGGTTCAT
LOC_Os06g48950
Os.22271.2.S1_x_at--481--2251Chr06:29663804..29663828 (25 bp)
AAATTCACCAGTCCATATTGTCATG
LOC_Os06g48950
Os.22271.2.S1_x_at--208--231Chr06:29663818..29663842 (25 bp)
ATATTGTCATGCTGCGCCGGTGTAA
LOC_Os06g48950
Os.22271.2.S1_x_at--624--10171Chr06:29663875..29663899 (25 bp)
TATCAGCTTACATCCGGGAGCGCAA
LOC_Os06g48950
Os.22271.2.S1_x_at--1022--4751Chr06:29663903..29663927 (25 bp)
GCTCGGCGGATCAGTAGTGTTTTTT
LOC_Os06g48950
Target Sequence 
GGAAGCTCGTTTACAAGGATCATGAAGATGACATCCTACTTCTTGGCGACGACCCATGGGAGGAATTTGTCGGTTGCGTG
AAATGCATTAGGATCCTTTCACCTCAAGAAGTTCAGCAGATGAGCTTGGAGGGTTGTGATCTCGGGAACAACATTCCCCC
GAATCAGGCCTGCAGCAGCTCAGACGGAGGGAATGCATGGAGGGCTCGCTGCGATCAGAACTCCGGTAACCCTTCCAATG
GTTCATANGAACAATTCGAATGACCAAATTCACCAGTCCATATTGTCATGCTGCGCCGGTGTAAGTAGACAATCACCGGA
GTGTTGTTGTAGATGTTATCAGCTTACATCCGGGAGCGCAAATGGCTCGGCGGATCAGTAGTGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22271.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis