Browse Element(s) Details


OsAffx.12844.1.S1_at

Description tigr:9631.m01302
TID=OsAffx.12844.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1369010/11expressed protein
LOC_Os06g489401/11Arabinose kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13640Os.51159.1.S1_at1/113+7359843..7360576hypothetical protein
LOC_Os03g13660NANA3+7368386..7368748hypothetical protein
LOC_Os03g13670OsAffx.5954.5.S1_x_at4/113+7372063..7376039retrotransposon protein, putative, unclassified
LOC_Os03g13670OsAffx.5954.4.S1_x_at3/113+7372063..7376039retrotransposon protein, putative, unclassified
LOC_Os03g13670OsAffx.29791.1.S1_x_at1/113+7372063..7376039retrotransposon protein, putative, unclassified
LOC_Os03g13680OsAffx.5954.1.S1_x_at6/113+7376898..7379928retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g13690OsAffx.12844.1.S1_at10/113+7383417..7386487expressed protein
LOC_Os03g13690Os.21222.1.S1_at1/113+7383417..7386487expressed protein
LOC_Os03g13700Os.27639.1.S1_x_at9/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13700OsAffx.8980.1.S1_at5/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0019566biological_processarabinose metabolism
GO:0004335molecular_functiongalactokinase activity
GO:0005524molecular_functionATP binding
GO:0019200molecular_functioncarbohydrate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12844.1.S1_at--1101--3651Chr03:7385433..7385457 (25 bp)
CTTACTCTCACTACCCTATAGGAAA
LOC_Os03g13690
OsAffx.12844.1.S1_at--427--3712Chr06:29627628..29627653 (25 bp)
CTACCCTATAGGAAAATTGGATATG
LOC_Os06g48940
OsAffx.12844.1.S1_at--71--4891Chr03:7385384..7385408 (25 bp)
GCTTTGGCCTGCAAGCTGCAGTTTA
LOC_Os03g13690
OsAffx.12844.1.S1_at--434--3851Chr03:7385376..7385400 (25 bp)
CTGCAAGCTGCAGTTTATTTTTGTC
LOC_Os03g13690
OsAffx.12844.1.S1_at--592--5031Chr03:7385367..7385391 (25 bp)
GCAGTTTATTTTTGTCCGCAGAGAT
LOC_Os03g13690
OsAffx.12844.1.S1_at--1038--5271Chr03:7385190..7385214 (25 bp)
GAAGGGAGTTCCTTAATGGGTACTG
LOC_Os03g13690
OsAffx.12844.1.S1_at--783--9171Chr03:7385177..7385201 (25 bp)
TAATGGGTACTGGAAACTTTATCTA
LOC_Os03g13690
OsAffx.12844.1.S1_at--417--3291NONE
CAAATGGTGGTGAGGCTTGTAGATT
NONE
OsAffx.12844.1.S1_at--349--6211Chr03:7383746..7383769 (24 bp)
GAGGCTTGTAGATTGAAACTACCTA
LOC_Os03g13690
OsAffx.12844.1.S1_at--76--8971Chr03:7383733..7383757 (25 bp)
TGAAACTACCTAGAATTCTGGAAGC
LOC_Os03g13690
OsAffx.12844.1.S1_at--294--3151Chr03:7383720..7383744 (25 bp)
AATTCTGGAAGCAGTCTGGGCTTGT
LOC_Os03g13690
Target Sequence 
CTTACTCTCACTACCCTATAGGAAAATTGGATATGGAACTGCAAGTGAGGCTTTGGCCTGCAAGCTGCAGTTTATTTTTG
TCCGCAGAGATTATTTTAATGAAGAGCCATTCTTGCGGATTTTACTTGAGCACTACCAGAGCAGTATTGAAATGACCAGA
AGGGAGTTCCTTAATGGGTACTGGAAACTTTATCTACTCCGTGCTCTCACACTTGAACCATGCTATGATGGTCCAACAAA
TGGTGGTGAGGCTTGTAGATTGAAACTACCTAGAATTCTGGAAGCAGTCTGGGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis