Browse Element(s) Details


Os.10452.1.S1_at

Description gb:AK100490.1
DB_XREF= gi:32985699
TID=Os.10452.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098G01, full insert sequence.
FL= gb:AK100490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1372011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13690OsAffx.12844.1.S1_at10/113+7383417..7386487expressed protein
LOC_Os03g13690Os.21222.1.S1_at1/113+7383417..7386487expressed protein
LOC_Os03g13700Os.27639.1.S1_x_at9/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13700OsAffx.8980.1.S1_at5/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein
LOC_Os03g13730OsAffx.3231.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730Os.8640.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730OsAffx.28716.1.S1_s_at1/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740Os.6244.1.S1_x_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13740Os.6244.1.S1_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10452.1.S1_at--70--4871Chr03:7412204..7412228 (25 bp)
GCTAGATGACCCTTCATGTTTGCAT
LOC_Os03g13720
Os.10452.1.S1_at--577--9251Chr03:7412231..7412255 (25 bp)
TCCTACAGCACCACCTATGGATGAA
LOC_Os03g13720
Os.10452.1.S1_at--364--8911Chr03:7412306..7412330 (25 bp)
TGAGCAAGCTGCATCCAATTTGTTT
LOC_Os03g13720
Os.10452.1.S1_at--270--3191Chr03:7412321..7412345 (25 bp)
CAATTTGTTTGATTTCAGCCCAGTG
LOC_Os03g13720
Os.10452.1.S1_at--857--4871Chr03:7412367..7412391 (25 bp)
GCTATAGACATACAGCCTGCTGAGG
LOC_Os03g13720
Os.10452.1.S1_at--892--6531Chr03:7412439..7412463 (25 bp)
GATTTCAAGCCATACCAAGACTTTT
LOC_Os03g13720
Os.10452.1.S1_at--804--2391Chr03:7412482..7412506 (25 bp)
AAAAGCCACCGCAGTAGGCCTTTGC
LOC_Os03g13720
Os.10452.1.S1_at--274--891Chr03:7412497..7412521 (25 bp)
AGGCCTTTGCTTATGCTGATACTTG
LOC_Os03g13720
Os.10452.1.S1_at--494--8831Chr03:7412569..7412593 (25 bp)
TGATCTGGAGTATGCCCCTATATTT
LOC_Os03g13720
Os.10452.1.S1_at--578--7991Chr03:7412627..7412651 (25 bp)
GGATGAACCCACTTGACTTTTGAAT
LOC_Os03g13720
Os.10452.1.S1_at--186--2711Chr03:7412660..7412684 (25 bp)
AAGCTTTAGCTAACATCTTGCAATG
LOC_Os03g13720
Target Sequence 
GCTAGATGACCCTTCATGTTTGCATGCTCCTACAGCACCACCTATGGATGAAAACTTTATGACATTTGTTTGTGGAAGAG
CTGGAATTCCTCATTCTGGACCTGAGCAAGCTGCATCCAATTTGTTTGATTTCAGCCCAGTGAGGATGAAATTTGAGTCT
CCAGCTATAGACATACAGCCTGCTGAGGAAAAAGTATATAAATGCTTGAAGAAGCAATTTTTAGCATGGCAAAACGATTT
CAAGCCATACCAAGACTTTTGTAACTCATATCAAATACAAAAGCCACCGCAGTAGGCCTTTGCTTATGCTGATACTTGTA
ATATTGCATTAGAAAGACTTGGGTTTCGGGAAAGTATTTCTTTCCTGATCTGGAGTATGCCCCTATATTTGCATATTATC
ATTTTGGGTATTTGGATCAGGTAGGATGAACCCACTTGACTTTTGAATCATTTTGTAAGCTTTAGCTAACATCTTGCAAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis