Browse Element(s) Details


OsAffx.28716.1.S1_s_at

Description tigr:9635.m03206
TID=OsAffx.28716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3261011/11endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os03g137301/11Translocase of chloroplast 34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019750biological_processchloroplast transport
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0003924molecular_functionGTPase activity
GO:0004888molecular_functiontransmembrane receptor activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28716.1.S1_s_at--521--8691Chr07:19442841..19442865 (25 bp)
TGTGCAAGCTGCAGGATTACAAGCT
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--475--131Chr07:19442826..19442850 (25 bp)
ATTACAAGCTGGGAGGCATCGAGTT
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--434--10471Chr07:19442803..19442827 (25 bp)
TTGATCGGGAGTACGGAAAACCTCG
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--219--5431Chr07:19442788..19442812 (25 bp)
GAAAACCTCGGGATTGATTACCTGA
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--29--8131Chr07:19442753..19442777 (25 bp)
GGACTAAACTTCACCTGAGGCCGAG
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--701--8931Chr07:19442708..19442732 (25 bp)
TGACCGTCGTCGTCACGGGCGATCC
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--301--1931Chr07:19442625..19442649 (25 bp)
ACGGCGCCTTCCGAGTAGTTTGCGG
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--980--6931Chr07:19442611..19442635 (25 bp)
GTAGTTTGCGGTTGACTGCACGATT
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--308--5731Chr07:19442598..19442622 (25 bp)
GACTGCACGATTTGGTGTGCGCATT
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--986--10831Chr07:19442587..19442611 (25 bp)
TTGGTGTGCGCATTGCACCGGTGCA
LOC_Os07g32610
OsAffx.28716.1.S1_s_at--756--1974Chr04:19888042..19888062 (21 bp)
ACTGCTCCCATCAGATGGCCTAATA
NONE
Target Sequence 
TGTGCAAGCTGCAGGATTACAAGCTGGGAGGCATCGAGTTGATCGGGAGTACGGAAAACCTCGGGATTGATTACCTGAAG
AAACGCAGGGACTAAACTTCACCTGAGGCCGAGCTGCCACCTCGGCGTGGTCCTGACCGTCGTCGTCACGGGCGATCCGC
CGCCGGTGCATGGCGCATTGGCGCCACGTCGGAAGCTGCGGGACAGCACTGGTTCTACGGCGCCTTCCGAGTAGTTTGCG
GTTGACTGCACGATTTGGTGTGCGCATTGCACCGGTGCAGCCACACTCACTGCTCCCATCAGATGGCCTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28716.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis