Browse Element(s) Details


Os.15570.1.S1_at

Description gb:AK068586.1
DB_XREF= gi:32978603
TID=Os.15570.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154E03, full insert sequence.
FL= gb:AK068586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3263011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein
LOC_Os07g32650Os.8529.1.S1_at11/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32650Os.50755.1.S1_at9/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15570.1.S1_at--80--10671Chr07:19461135..19461158 (24 bp)
TTCCTGCTGGTGTCCGTCCTGGGCA
LOC_Os07g32630
Os.15570.1.S1_at--1094--5491Chr07:19460904..19460928 (25 bp)
GGAAATCCGGCGAGGTGCCGTTAAT
LOC_Os07g32630
Os.15570.1.S1_at--93--6151Chr07:19460893..19460917 (25 bp)
GAGGTGCCGTTAATGTCCCGAAGAA
LOC_Os07g32630
Os.15570.1.S1_at--401--2851Chr07:19460858..19460882 (25 bp)
AAGGACTGAAAATCCGTCGACTGAC
LOC_Os07g32630
Os.15570.1.S1_at--1047--531Chr07:19460847..19460871 (25 bp)
ATCCGTCGACTGACGACTGTGCAGT
LOC_Os07g32630
Os.15570.1.S1_at--722--1851Chr07:19460835..19460859 (25 bp)
ACGACTGTGCAGTGCAGAGCTGGCC
LOC_Os07g32630
Os.15570.1.S1_at--681--3031Chr07:19460808..19460832 (25 bp)
AATCGAAACGCCCATGCGGCTTTGC
LOC_Os07g32630
Os.15570.1.S1_at--869--611Chr07:19460795..19460819 (25 bp)
ATGCGGCTTTGCGTGACTGCGTCTA
LOC_Os07g32630
Os.15570.1.S1_at--318--5731Chr07:19460781..19460805 (25 bp)
GACTGCGTCTACACGTCGACATGTG
LOC_Os07g32630
Os.15570.1.S1_at--277--2131Chr07:19460771..19460795 (25 bp)
ACACGTCGACATGTGTACGTTTTAA
LOC_Os07g32630
Os.15570.1.S1_at--91--6571Chr07:19460731..19460755 (25 bp)
GATTCTATCTATCGACTATACGTGT
LOC_Os07g32630
Target Sequence 
TTCCTGCTGGTGTCCGTCCTGGGCATCGCCGTGCCGCTGCGGCTGGACCGGGAGCGGGACAACTTCGTGGAGGCGGAGGA
GCTGGAGCGCGCGGTGAGCACCCTGCTGGGCGGCGGGGACGGCGAGGCGGGGAGGAAGGCGAGGGAGAAGGCCGTGNCCG
TGAAGGCGGCGTNGCCGGAAGGCCGTCGAGAAGGGCGGGTCGTCTGACGCCGCGTTCCAGAGGCTCNCCGAGGAAATCCG
GCGAGGTGCCGTTAATGTCCCGAAGAAGCGAAACTGAAAGGACTGAAAATCCGTCGACTGACGACTGTGCAGTGCAGAGC
TGGCCNAAATCGAAACGCCCATGCGGCTTTGCGTGACTGCGTCTACACGTCGACATGTGTACGTTTTAAAATGCACNGGG
TTAGAGATTCTATCTATCGACTATACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis