Browse Element(s) Details


Os.49200.2.S1_at

Description gb:AK069383.1
DB_XREF= gi:32979407
TID=Os.49200.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032E23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013E15, full insert sequence.
FL= gb:AK069383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3260011/11Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os04g402901/11ATPase, AAA family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49200.2.S1_at--321--3592Chr07:19437041..19437065 (25 bp)
CATTTCTTCCTCATTGCTTATGCAT
LOC_Os07g32600
Os.49200.2.S1_at--539--6411Chr07:19437110..19437134 (25 bp)
GATCTGTTCATTCATGTTTGCTTGG
LOC_Os07g32600
Os.49200.2.S1_at--816--1111Chr07:19437155..19437179 (25 bp)
AGTGCTTGCGGTTGGGTGATAATTC
LOC_Os07g32600
Os.49200.2.S1_at--1030--10751Chr07:19437259..19437283 (25 bp)
TTGACTGGGTCTGGGATTTGCTCAT
LOC_Os07g32600
Os.49200.2.S1_at--1119--4811Chr07:19437278..19437302 (25 bp)
GCTCATTTGCACAGTAGTTTCTCGT
LOC_Os07g32600
Os.49200.2.S1_at--1104--1191Chr07:19437293..19437317 (25 bp)
AGTTTCTCGTGATCCACTTTAGGTC
LOC_Os07g32600
Os.49200.2.S1_at--768--2731Chr07:19437322..19437346 (25 bp)
AAGAATTGCAACTGGCCAGGCCACA
LOC_Os07g32600
Os.49200.2.S1_at--522--8431Chr07:19437340..19437364 (25 bp)
GGCCACACTGGAAACGTTTCTCTGA
LOC_Os07g32600
Os.49200.2.S1_at--908--5731Chr07:19437421..19437445 (25 bp)
GACGGCATTCATTCATGGAAGTCCA
LOC_Os07g32600
Os.49200.2.S1_at--322--8531Chr07:19437477..19437501 (25 bp)
TGGACAACACAAGCGCACAGGTATT
LOC_Os07g32600
Os.49200.2.S1_at--831--5971Chr07:19437520..19437544 (25 bp)
GAGAAAGGTTGCTTTTCCTTCTAGG
LOC_Os07g32600
Target Sequence 
CATTTCTTCCTCATTGCTTATGCATTTAGGTTCTTTCTTCTTTTCATGTTTTCAGTTTTAACAGTTTTTGATCTGTTCAT
TCATGTTTGCTTGGAATTGGAAGGATTTAGTAGAAGTGCTTGCGGTTGGGTGATAATTCTGTGACATTGAGTGAGGATTG
TGGTTAAGAAATGCACTTGTTAATCAGCTGACGAGTGACAGTTCGAGTAGCTTTAGGATTGACTGGGTCTGGGATTTGCT
CATTTGCACAGTAGTTTCTCGTGATCCACTTTAGGTCTATAAAGAATTGCAACTGGCCAGGCCACACTGGAAACGTTTCT
CTGAAGATCTGGGGTTTCGATTTCAAGTAGGAGAGACGCCATTGTCACGCCCGAAAAGTAGACGGCATTCATTCATGGAA
GTCCATTCAGGAAAGTTGTGCGGTTTGTCTTTTAATTGGACAACACAAGCGCACAGGTATTTATTCGGTTGATTGTTAGG
AGAAAGGTTGCTTTTCCTTCTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49200.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis