Browse Element(s) Details


Os.18234.1.S1_at

Description gb:AK066776.1
DB_XREF= gi:32976794
TID=Os.18234.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075A01, full insert sequence.
FL= gb:AK066776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3259011/11methionine aminopeptidase, type I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016485biological_processprotein processing
GO:0031365biological_processN-terminal protein amino acid modification
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004239molecular_functionmethionyl aminopeptidase activity
GO:0008235molecular_functionmetalloexopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18234.1.S1_at--146--4971Chr07:19429962..19429986 (25 bp)
GCATACTGTACTAGTCACTCGGACA
LOC_Os07g32590
Os.18234.1.S1_at--557--10791Chr07:19430038..19430062 (25 bp)
TTGTTGGGCCATTTACCTTGAGCAT
LOC_Os07g32590
Os.18234.1.S1_at--991--10111Chr07:19430066..19430090 (25 bp)
TATGTTCATATAACAGCCCCAGCCC
LOC_Os07g32590
Os.18234.1.S1_at--1091--6891Chr07:19430104..19430128 (25 bp)
GTATCCTACCGAAATGTCTCTTTGG
LOC_Os07g32590
Os.18234.1.S1_at--122--771Chr07:19430117..19430229 (25 bp)
ATGTCTCTTTGGTCCACATGTGGCA
LOC_Os07g32590
Os.18234.1.S1_at--843--3611Chr07:19430300..19430324 (25 bp)
CTTGTGCGAAGGGTTTGCGGATCCT
LOC_Os07g32590
Os.18234.1.S1_at--911--5212Chr07:19430327..19430351 (25 bp)
GAATTTTGTGTGTGGCATACTGGCA
LOC_Os07g32590
Os.18234.1.S1_at--768--6771Chr07:19430360..19430384 (25 bp)
GTTACTGACGTATTGCTAGGCATGT
LOC_Os07g32590
Os.18234.1.S1_at--21--8771Chr07:19430412..19430436 (25 bp)
TGTTTCCTCCTTAATACAACGCCGA
LOC_Os07g32590
Os.18234.1.S1_at--90--4951Chr07:19430452..19430476 (25 bp)
GCATTGCTGTTGGTTTGCTTGACCT
LOC_Os07g32590
Os.18234.1.S1_at--416--8931Chr07:19430471..19430495 (25 bp)
TGACCTGCTGCAGCCTGTATACAAA
LOC_Os07g32590
Target Sequence 
GCATACTGTACTAGTCACTCGGACAGGGGCTGAAATACTGACAAAACTTTGACATCTTCTTTATTATGATAAGAAGTTGT
TGGGCCATTTACCTTGAGCATGTTTATGTTCATATAACAGCCCCAGCCCCCCGCTAGCAGCCGTATCCTACCGAAATGTC
TCTTTGGTCCACATGTGGCAGGATTACAGATCACAGGCTGAAGAGCTGATCGATGAGATCTGTGATGAAAGTTCTGTACC
AGGCGAGTGGCTTGTGCGAAGGGTTTGCGGATCCTTAGAATTTTGTGTGTGGCATACTGGCATATGATCAGTTACTGACG
TATTGCTAGGCATGTAATGTGTAAATAGTCCTTAATTTGTTTTGTTTCCTCCTTAATACAACGCCGAANGCTGCAGTCGC
TTGCATTGCTGTTGGTTTGCTTGACCTGCTGCAGCCTGTATACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis