Browse Element(s) Details


OsAffx.5501.1.S1_at

Description tigr:9635.m03200
TID=OsAffx.5501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3256011/11ATP-dependent protease La domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5501.1.S1_at--1126--4751Chr07:19405003..19405027 (25 bp)
GCTGCACATCTTCGAGTTCCGCTAC
LOC_Os07g32560
OsAffx.5501.1.S1_at--983--4051Chr07:19404991..19405015 (25 bp)
CGAGTTCCGCTACCGCATCATGATG
LOC_Os07g32560
OsAffx.5501.1.S1_at--850--9951Chr07:19404981..19405005 (25 bp)
TACCGCATCATGATGCACACCGTGC
LOC_Os07g32560
OsAffx.5501.1.S1_at--296--8871Chr07:19404971..19404995 (25 bp)
TGATGCACACCGTGCTCCAGACCGA
LOC_Os07g32560
OsAffx.5501.1.S1_at--220--4911Chr07:19404845..19404869 (25 bp)
GCTTCTTCCTCATCTGCAAGGGGCA
LOC_Os07g32560
OsAffx.5501.1.S1_at--933--4651Chr07:19404809..19404833 (25 bp)
GCGTCGCGCGGGTCGTGCGCACCAA
LOC_Os07g32560
OsAffx.5501.1.S1_at--528--4491Chr07:19404768..19404792 (25 bp)
GCCGTGCAGTGGCTCGAGGACCGCC
LOC_Os07g32560
OsAffx.5501.1.S1_at--1095--4051Chr07:19404688..19404712 (25 bp)
CGAGGCCCTCATGCGGGACGTCATA
LOC_Os07g32560
OsAffx.5501.1.S1_at--72--9151Chr07:19404677..19404701 (25 bp)
TGCGGGACGTCATACGCATCGCCAA
LOC_Os07g32560
OsAffx.5501.1.S1_at--146--4571Chr07:19404537..19404561 (25 bp)
GCGCTCCTCGAGCTTGAGGACACCG
LOC_Os07g32560
OsAffx.5501.1.S1_at--1046--5911Chr07:19404528..19404552 (25 bp)
GAGCTTGAGGACACCGCCGCCAGGC
LOC_Os07g32560
Target Sequence 
GCTGCACATCTTCGAGTTCCGCTACCGCATCATGATGCACACCGTGCTCCAGACCGACCTCCGCTTCGGGGTGGTGTTCG
CCGGGTCCGGCGCCGGGGGCGCCGCCGACGTCGGGTGCGTCGGGGAGGTCGTCAAGCACGAGCGCCTCGCCGACGACCGC
TTCTTCCTCATCTGCAAGGGGCAGGAGCGGTTCCGCGTCGCGCGGGTCGTGCGCACCAAGCCCTACCTCGTCGCCGCCGT
GCAGTGGCTCGAGGACCGCCCGCCCGCCGAGACCCCCGCGCCGGGGGACGACGCCGAGGCGCTCGCCACCGACGTCGAGG
CCCTCATGCGGGACGTCATACGCATCGCCAACCGCCTCAACGGCAAGCCCGAGAAGGACGTCGGGGACCTGCGGCGGGGC
CTCTTCCCCACCCCTTTCTCCTTCTACGTCGGCAACACCTTCGAGGGCGCGCCGCGGGAGCAGCAGGCGCTCCTCGAGCT
TGAGGACACCGCCGCCAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis