Browse Element(s) Details


OsAffx.16526.1.S1_x_at

Description tigr:9635.m03197
TID=OsAffx.16526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HAK7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3253011/11Potassium transporter 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32510OsAffx.28712.1.S1_at11/117+19360911..19363044Dof domain, zinc finger family protein, expressed
LOC_Os07g32520OsAffx.16525.1.S1_at11/117+19368359..19369118hypothetical protein
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16526.1.S1_x_at--411--2311Chr07:19379030..19379054 (25 bp)
AAAGATTTCTCTTTCGTCGGGTCTG
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--800--7191Chr07:19379015..19379039 (25 bp)
GTCGGGTCTGTCCAAAGAGCTATCA
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--828--3571Chr07:19378992..19379016 (25 bp)
CATATGTTTCGCTGCATTGCTAGGT
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--361--8131Chr07:19377888..19377912 (25 bp)
GGACTACATATCATTTCAGCAGCTT
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--62--5891Chr07:19377821..19377845 (25 bp)
GAGCGCTCCCTAGAGAGTGACCAAT
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--962--3051Chr07:19377799..19377823 (25 bp)
AATACGACGGTACAGACTCAGAAGA
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--646--6171Chr07:19377776..19377800 (25 bp)
GAGGAGGTTGCATCAGCCTCGTCAA
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--440--9411Chr07:19377745..19377769 (25 bp)
TCGTCGGTCCCAATGGCAGTATCAA
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--1140--1191Chr07:19377728..19377752 (25 bp)
AGTATCAATTCTCTCGGTGTTCCAC
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--925--8711Chr07:19377655..19377679 (25 bp)
TGTCGTTCGACGGATCGCTGGATGA
LOC_Os07g32530
OsAffx.16526.1.S1_x_at--619--3691Chr07:19377489..19377513 (25 bp)
CTATTTCTACGCCTTCTTGAGGAGG
LOC_Os07g32530
Target Sequence 
AAAGATTTCTCTTTCGTCGGGTCTGTCCAAAGAGCTATCATATGTTTCGCTGCATTGCTAGGTATGGGTACAAGGACATA
CGCAAGGAGGACTACATATCATTTCAGCAGCTTCTGATAGAGAGTCTCGAGAAGTTCATGCGGCGGGAAGCCCAAGAGCG
CTCCCTAGAGAGTGACCAATACGACGGTACAGACTCAGAAGAGGAGGTTGCATCAGCCTCGTCAAGAGCTCTCGTCGGTC
CCAATGGCAGTATCAATTCTCTCGGTGTTCCACCTGCCGAGGCGGCTGGTACTACCGAGCACCCAACCATTGGATCGAGC
ATGTCGTTCGACGGATCGCTGGATGAGGCGATCGATGGGAGGGGAAGCCTCGACGACGAGCTCTCGTTCATCCACAAGGC
CAAGGAGTCCGGCGTGGTGTACCTCCTGGGCCACGGCGACATCAGAGCTCGGAAGGAGTCCTTCTTTGTCAAGAAGCTGG
TGATCAACTATTTCTACGCCTTCTTGAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16526.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis