Browse Element(s) Details


OsAffx.28712.1.S1_at

Description tigr:9635.m03194
TID=OsAffx.28712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Dof domain, zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3251011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32510OsAffx.28712.1.S1_at11/117+19360911..19363044Dof domain, zinc finger family protein, expressed
LOC_Os07g32520OsAffx.16525.1.S1_at11/117+19368359..19369118hypothetical protein
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28712.1.S1_at--391--3791Chr07:19361454..19361478 (25 bp)
CTCGGGCTCTTCCAGGCCATGCAGT
LOC_Os07g32510
OsAffx.28712.1.S1_at--227--9231Chr07:19361464..19361488 (25 bp)
TCCAGGCCATGCAGTCGGTGGTGTC
LOC_Os07g32510
OsAffx.28712.1.S1_at--889--4331Chr07:19361470..19361494 (25 bp)
CCATGCAGTCGGTGGTGTCCGACGC
LOC_Os07g32510
OsAffx.28712.1.S1_at--787--1831Chr07:19361491..19361515 (25 bp)
ACGCGGCCGCGTTCGAGATGCACCA
LOC_Os07g32510
OsAffx.28712.1.S1_at--443--3411Chr07:19361514..19361538 (25 bp)
CAGCAGCATCAGTCGCAGGTGGATC
LOC_Os07g32510
OsAffx.28712.1.S1_at--763--2651Chr07:19361689..19361713 (25 bp)
AAGTCAAGGCGGAGGCCACCACCGG
LOC_Os07g32510
OsAffx.28712.1.S1_at--577--5851Chr07:19361715..19361739 (25 bp)
GACCACCAGCAGAAGTCATCGGCGG
LOC_Os07g32510
OsAffx.28712.1.S1_at--614--5031Chr07:19361753..19361777 (25 bp)
GCAGAGCTGGGACCTGCCGACGCCG
LOC_Os07g32510
OsAffx.28712.1.S1_at--572--9411Chr07:19361778..19361802 (25 bp)
TCGTCGTCCAACGTCGAGGCGAGCA
LOC_Os07g32510
OsAffx.28712.1.S1_at--230--4011Chr07:19361782..19361806 (25 bp)
CGTCCAACGTCGAGGCGAGCATCAT
LOC_Os07g32510
OsAffx.28712.1.S1_at--1156--891Chr07:19361794..19361818 (25 bp)
AGGCGAGCATCATCGCGTCGGACGC
LOC_Os07g32510
Target Sequence 
CTCGGGCTCTTCCAGGCCATGCAGTCGGTGGTGTCCGACGCGGCCGCGTTCGAGATGCACCAGCAGCATCAGTCGCAGGT
GGATCACCTGCTCGGCCTCGGCTACGGCGCCGCGGGGGCGCAGATCCAGGCGGCCAAGCCGTGGCTGCATGACGGCGGCG
CCACCGGTGGCCTCCTCGACGGCTTCTACGCGCCGCTCCTGTCCGGCTCCATCGTGCCGGGGCTCGAGGAGCTCCAAGTC
AAGGCGGAGGCCACCACCGGCGACCACCAGCAGAAGTCATCGGCGGCGGCGGCCGGTGAGCAGAGCTGGGACCTGCCGAC
GCCGTCGTCGTCCAACGTCGAGGCGAGCATCATCGCGTCGGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis