Browse Element(s) Details


OsAffx.16525.1.S1_at

Description tigr:9635.m03195
TID=OsAffx.16525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3252011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32510OsAffx.28712.1.S1_at11/117+19360911..19363044Dof domain, zinc finger family protein, expressed
LOC_Os07g32520OsAffx.16525.1.S1_at11/117+19368359..19369118hypothetical protein
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16525.1.S1_at--1162--2191Chr07:19368389..19368413 (25 bp)
ACAACAGAGCCTTCATGCATCTTCC
LOC_Os07g32520
OsAffx.16525.1.S1_at--880--7711Chr07:19368416..19368440 (25 bp)
GGTGGCCCTCGTTCTCCAAGAAGGG
LOC_Os07g32520
OsAffx.16525.1.S1_at--713--2871Chr07:19368436..19368460 (25 bp)
AAGGGCCGACGGTGACACAGTCATG
LOC_Os07g32520
OsAffx.16525.1.S1_at--446--5511Chr07:19368489..19368513 (25 bp)
GAACAAACAGATCCAACGCTTCCTC
LOC_Os07g32520
OsAffx.16525.1.S1_at--71--2611Chr07:19368503..19368527 (25 bp)
AACGCTTCCTCAACTGGATCTGGCG
LOC_Os07g32520
OsAffx.16525.1.S1_at--489--8471Chr07:19368523..19368547 (25 bp)
TGGCGTCCTCCTAGCTAGATATGAC
LOC_Os07g32520
OsAffx.16525.1.S1_at--476--691Chr07:19368543..19368567 (25 bp)
ATGACGCCCTTCAATCGGATATGTG
LOC_Os07g32520
OsAffx.16525.1.S1_at--167--5011Chr07:19368567..19368591 (25 bp)
GCATGGTGACCAGAGATGCCCGCAA
LOC_Os07g32520
OsAffx.16525.1.S1_at--186--10651Chr07:19368842..19368866 (25 bp)
TTCGCTCGATGGAGGGACGCTGATA
LOC_Os07g32520
OsAffx.16525.1.S1_at--39--6211Chr07:19368894..19369035 (25 bp)
GAGGCAGAGGCTTATTTCTTCGGTT
LOC_Os07g32520
OsAffx.16525.1.S1_at--896--151Chr07:19369024..19369048 (25 bp)
ATTTCTTCGGTTGTACGGAGCGCCA
LOC_Os07g32520
Target Sequence 
ACAACAGAGCCTTCATGCATCTTCCTCGGTGGCCCTCGTTCTCCAAGAAGGGCCGACGGTGACACAGTCATGCTTAAAAA
GGATGGCAACAAGCGGATGGGAACAAACAGATCCAACGCTTCCTCAACTGGATCTGGCGTCCTCCTAGCTAGATATGACG
CCCTTCAATCGGATATGTGCATGGTGACCAGAGATGCCCGCAAGGCGCGGAGAGGAAGTGGGAGGGAGAGACGGCCACTG
CGGAGTGGTTCGCTCGATGGAGGGACGCTGATATGGCGGAGGCACGGGGCAGTGCTCATGGAGGCAGAGGCTTATTTCTT
CGGTTGTACGGAGCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis