Browse Element(s) Details


Os.57120.1.S1_at

Description gb:AK110955.1
DB_XREF= gi:32996164
TID=Os.57120.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-A05, full insert sequence.
FL= gb:AK110955.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3255011/11dimethyladenosine transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000154biological_processrRNA modification
GO:0009409biological_processresponse to cold
GO:0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
GO:0008649molecular_functionrRNA methyltransferase activity
GO:0016422molecular_functionmRNA (2'-O-methyladenosine-N6-)-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57120.1.S1_at--89--8271Chr07:19402743..19402767 (25 bp)
GGCAGCAGACTCATCGCACTTGGCG
LOC_Os07g32550
Os.57120.1.S1_at--811--3951Chr07:19402820..19402844 (25 bp)
CGGAGCACCCAGCTTCAGTGAGGAA
LOC_Os07g32550
Os.57120.1.S1_at--1141--2791Chr07:19402866..19402890 (25 bp)
AAGATCACCGGTGCGTTGGAGTCCT
LOC_Os07g32550
Os.57120.1.S1_at--30--1331Chr07:19402906..19402930 (25 bp)
AGAGGCCCTCCAAGCTGTCGAACGA
LOC_Os07g32550
Os.57120.1.S1_at--755--7691Chr07:19402969..19402993 (25 bp)
GGGTACGGTTTCAGTAGCACTTATA
LOC_Os07g32550
Os.57120.1.S1_at--683--10411Chr07:19402989..19403013 (25 bp)
TTATATCCGATCATTGCTCGCCGTT
LOC_Os07g32550
Os.57120.1.S1_at--391--731Chr07:19403064..19403088 (25 bp)
ATGTTGCAGCTGAGGTCAGGTCTCC
LOC_Os07g32550
Os.57120.1.S1_at--183--4492Chr08:1619550..1619645 (25 bp)
GCCGGTTGCCACATCAATACATCAT
NONE
Os.57120.1.S1_at--318--411Chr07:19403123..19403147 (25 bp)
ATCATGTTCATGTCAGCCGTCACTG
LOC_Os07g32550
Os.57120.1.S1_at--106--2131Chr07:19403162..19403186 (25 bp)
ACAGGACGCCAGATTACTTCAAGTA
LOC_Os07g32550
Os.57120.1.S1_at--670--2031Chr07:19403177..19403201 (25 bp)
ACTTCAAGTATGCTCGTCAACCGGT
LOC_Os07g32550
Target Sequence 
GGCAGCAGACTCATCGCACTTGGCGGTGGCGACGACGACGGTGACATGAGCGACGGCGACAGCAATGAAGGCCACGACGG
AGCACCCAGCTTCAGTGAGGAAGAGGTCGCCGTGTTCAAGGCGAAGATCACCGGTGCGTTGGAGTCCTGTGAGCTCGCCG
GCAAGAGGCCCTCCAAGCTGTCGAACGACGAGCTCCTGCGTTTGCTCAAGTTGCTCAATGAACAAGGGGTACGGTTTCAG
TAGCACTTATATCCGATCATTGCTCGCCGTTTTTCTACCTCAGCGAGCAGTAGAGCCAAGAACAAGAAGATGAAGGTTGG
CATGTTGCAGCTGAGGTCAGGTCTCCTGCCATCCATGGCGGCCGGTTGCCACATCAATACATCATGTTCATGTCAGCCGT
CACTGGCAGCTCGTCAGCCACAGGACGCCAGATTACTTCAAGTATGCTCGTCAACCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis