Browse Element(s) Details


OsAffx.28716.1.S1_at

Description tigr:9635.m03206
TID=OsAffx.28716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3261011/11endonuclease/exonuclease/phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_s_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32610OsAffx.28716.1.S1_at11/117+19442485..19443935endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28716.1.S1_at--598--8631Chr07:19442989..19443013 (25 bp)
TGGGTCGACGCCTGGACTGTGCTGA
LOC_Os07g32610
OsAffx.28716.1.S1_at--146--3871Chr07:19442968..19442992 (25 bp)
CTGAGGCCGGAGCACGAGAGAGCCA
LOC_Os07g32610
OsAffx.28716.1.S1_at--79--1351Chr07:19442952..19442976 (25 bp)
AGAGAGCCAGTGCTCGACGTACGAC
LOC_Os07g32610
OsAffx.28716.1.S1_at--557--1131Chr07:19442944..19442968 (25 bp)
AGTGCTCGACGTACGACGGCATCTG
LOC_Os07g32610
OsAffx.28716.1.S1_at--1042--4791Chr07:19442941..19442965 (25 bp)
GCTCGACGTACGACGGCATCTGGAA
LOC_Os07g32610
OsAffx.28716.1.S1_at--124--9951Chr07:19442933..19442957 (25 bp)
TACGACGGCATCTGGAACGAGGATC
LOC_Os07g32610
OsAffx.28716.1.S1_at--1092--1931Chr07:19442929..19442953 (25 bp)
ACGGCATCTGGAACGAGGATCTCGC
LOC_Os07g32610
OsAffx.28716.1.S1_at--583--3551Chr07:19442925..19442949 (25 bp)
CATCTGGAACGAGGATCTCGCCGTG
LOC_Os07g32610
OsAffx.28716.1.S1_at--435--8291Chr07:19442894..19442918 (25 bp)
GGCTTCACGGCGAATGCTGGCCTCG
LOC_Os07g32610
OsAffx.28716.1.S1_at--204--10511Chr07:19442891..19442915 (25 bp)
TTCACGGCGAATGCTGGCCTCGTCG
LOC_Os07g32610
OsAffx.28716.1.S1_at--983--2731Chr07:19442863..19442887 (25 bp)
AAGAAGAGATCGGACCGGTTCGTGT
LOC_Os07g32610
Target Sequence 
TGGGTCGACGCCTGGACTGTGCTGAGGCCGGAGCACGAGAGAGCCAGTGCTCGACGTACGACGGCATCTGGAACGAGGAT
CTCGCCGTGTTCAACGGCTTCACGGCGAATGCTGGCCTCGTCGCTGAAGAAGAGATCGGACCGGTTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis