Browse Element(s) Details


Os.8529.1.S1_at

Description gb:AK063640.1
DB_XREF= gi:32973658
TID=Os.8529.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G08, full insert sequence.
FL= gb:AK063640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3265011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32620Os.8842.1.S1_at11/117+19452820..19454476UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32630Os.15570.1.S1_at11/117+19460655..19462566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g32640OsAffx.16528.1.S1_at10/117+19465142..19466631hypothetical protein
LOC_Os07g32650Os.8529.1.S1_at11/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32650Os.50755.1.S1_at9/117+19471599..19475361retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32660OsAffx.28717.1.S1_at10/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32660OsAffx.18522.1.S1_at1/117+19490279..19496842L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g32670Os.10614.1.S1_at11/117+19499139..19503463expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8529.1.S1_at--509--171Chr07:19472168..19472192 (25 bp)
ATTTCAGCTGGGACGAAGACCTCGA
LOC_Os07g32650
Os.8529.1.S1_at--162--2791Chr07:19472054..19472078 (25 bp)
AAGAGGCCGGACAGGTTCTTGTGCA
LOC_Os07g32650
Os.8529.1.S1_at--608--8871Chr07:19472026..19472050 (25 bp)
TGAGGGACTTCAAGCTGGACAGCGT
LOC_Os07g32650
Os.8529.1.S1_at--54--3671Chr07:19471866..19471890 (25 bp)
CTTAAATCTTCACCATGGCTGCTAA
LOC_Os07g32650
Os.8529.1.S1_at--1156--10491Chr07:19471822..19471846 (25 bp)
TTAAGAGTTGATGTCGCTGCCGGCT
LOC_Os07g32650
Os.8529.1.S1_at--892--4471Chr07:19471804..19471828 (25 bp)
GCCGGCTGCTCTAATGTACCTAAAG
LOC_Os07g32650
Os.8529.1.S1_at--877--7471Chr07:19471735..19471759 (25 bp)
GTGTGTCTCCATGTTGATCAATTGT
LOC_Os07g32650
Os.8529.1.S1_at--1066--7451Chr07:19471712..19471736 (25 bp)
GTGTCGATTATCTTTACTTGCTTTG
LOC_Os07g32650
Os.8529.1.S1_at--18--2271Chr07:19471685..19471709 (25 bp)
AAATCTGTTCTTCGATCCGGTGTTG
LOC_Os07g32650
Os.8529.1.S1_at--963--9771Chr07:19471628..19471652 (25 bp)
TAAGGATCTGCCCTGATGGCATGAT
LOC_Os07g32650
Os.8529.1.S1_at--542--3031Chr07:19471602..19471626 (25 bp)
AATGCCTTCCAGTTAATTTCTTGCG
LOC_Os07g32650
Target Sequence 
ATTTCAGCTGGGACGAAGACCTCGACAGGCCGCTCCGGCTGAGGCCCGGGTGGGTGGACGTACGACGTGGCGGCGAACCC
GATGCTGAAGGGGTGGCTCAAGCCGGAGATCAGGAAGAGGCCGGACAGGTTCTTGTGCAGGCTGAGGGACTTCAAGCTGG
ACAGCGTCGAGATGGTCGGCGTNGAGCCGATNCCCCGGCGTGACGCACTGCGACGACAAGGGGGGCATGCTGCCGGTGCT
CCCCAGCCACCACTTCGGTTTGCTGCTCACCATCGCCCCCCAAATCCACAAGTGATCGATCAGCTTAAATCTTCACCATG
GCTGCTAAAATTCTAGAACTGGAGATCTTAAGAGTTGATGTCGCTGCCGGCTGCTCTAATGTACCTAAAGTTTAGGTATC
TCGAGATTCTTGGAATTAGCTTTGTCATGTGTGTGTGTGTCTCCATGTTGATCAATTGTGTCGATTATCTTTACTTGCTT
TGTCAAATCTGTTCTTCGATCCGGTGTTGAAGGGTAACTCTTGGTGAAGAACTGAAGATGATAAGGATCTGCCCTGATGG
CATGATCAATGCCTTCCAGTTAATTTCTTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis