Browse Element(s) Details


OsAffx.18522.1.S1_at

Description gb:NM_197130.1
DB_XREF= gi:37535619
TID=OsAffx.18522.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0051D19.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3498011/11hypothetical protein
LOC_Os07g326601/11L-ascorbate oxidase homolog precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18522.1.S1_at--490--911Chr10:18334663..18334687 (25 bp)
AGGCGGACGCTCTGCACCTCGTTGA
LOC_Os10g34980
OsAffx.18522.1.S1_at--1060--1731Chr10:18334722..18334746 (25 bp)
ACCTTGCTGACGGTGCAGCGTGAAG
LOC_Os10g34980
OsAffx.18522.1.S1_at--1144--5031Chr10:18334769..18334793 (25 bp)
GCAGAGCAGGCCGACCCGAAAGGGA
LOC_Os10g34980
OsAffx.18522.1.S1_at--208--2611Chr10:18334781..18334805 (25 bp)
GACCCGAAAGGGAGGACCAAATGAG
LOC_Os10g34980
OsAffx.18522.1.S1_at--910--5851Chr10:18334795..18334819 (25 bp)
GACCAAATGAGGCACCACTGGTGGA
LOC_Os10g34980
OsAffx.18522.1.S1_at--487--8072Chr10:18334817..18334841 (25 bp)
GGAGCAGCCACGAGCCCACGATGCG
LOC_Os10g34980
OsAffx.18522.1.S1_at--155--1951Chr10:18334871..18334895 (25 bp)
ACTGGCCTTGGCGAGGTCGCCCTTT
LOC_Os10g34980
OsAffx.18522.1.S1_at--595--6151Chr10:18334883..18334907 (25 bp)
GAGGTCGCCCTTTCGACATGGCTGC
LOC_Os10g34980
OsAffx.18522.1.S1_at--46--5671Chr10:18334897..18334921 (25 bp)
GACATGGCTGCTTGCTTGTCCTCGT
LOC_Os10g34980
OsAffx.18522.1.S1_at--317--4931Chr10:18334906..18334930 (25 bp)
GCTTGCTTGTCCTCGTCTACACCAT
LOC_Os10g34980
OsAffx.18522.1.S1_at--274--2171Chr10:18334935..18334959 (25 bp)
ACACCTCACTTGTCTCGCCGTGTTG
LOC_Os10g34980
Target Sequence 
AGGCGGACGCTCTGCACCTCGTTGACGGCGCGACGTGTAGAGGGGGGAGGACGCCGGCGACCTTGCTGACGGTGCAGCGT
GAAGAGGGAGGAGGACACCGGCGGAGGCAGAGCAGGCCGACCCGAAAGGGAGGACCAAATGAGGCACCACTGGTGGAGCA
GCCACGAGCCCACGATGCGAAGGAGGCGTTGGACCGGATGCCGATGCGACTGGCCTTGGCGAGGTCGCCCTTTCGACATG
GCTGCTTGCTTGTCCTCGTCTACACCATCACCACACCTCACTTGTCTCGCCGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis