Browse Element(s) Details


OsAffx.7997.1.S1_at

Description tigr:9638.m03085
TID=OsAffx.7997.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative polyubiquitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3497011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7997.1.S1_at--95--3511Chr10:18333323..18333347 (25 bp)
CATGGTCACATCAGGAGCCGTCGGA
LOC_Os10g34970
OsAffx.7997.1.S1_at--447--7831Chr10:18333320..18333344 (25 bp)
GGTCACATCAGGAGCCGTCGGACAC
LOC_Os10g34970
OsAffx.7997.1.S1_at--95--7671Chr10:18333258..18333282 (25 bp)
GGGATCACGGAGGACTTCTGGTTGA
LOC_Os10g34970
OsAffx.7997.1.S1_at--533--2051Chr10:18333245..18333269 (25 bp)
ACTTCTGGTTGAGATACGATGGGAA
LOC_Os10g34970
OsAffx.7997.1.S1_at--900--1311Chr10:18333218..18333242 (25 bp)
AGATGGATGAGGTCGGCAGTCGCAC
LOC_Os10g34970
OsAffx.7997.1.S1_at--845--5011Chr10:18333203..18333227 (25 bp)
GCAGTCGCACGCTGGCCGATTACGG
LOC_Os10g34970
OsAffx.7997.1.S1_at--468--4711Chr10:18333193..18333217 (25 bp)
GCTGGCCGATTACGGCATCCATGAT
LOC_Os10g34970
OsAffx.7997.1.S1_at--248--3951Chr10:18333181..18333205 (25 bp)
CGGCATCCATGATCCTGCTACAGAG
LOC_Os10g34970
OsAffx.7997.1.S1_at--403--331Chr10:18333125..18333149 (25 bp)
ATACTAGGACGCTGTGGGTGAAGCC
LOC_Os10g34970
OsAffx.7997.1.S1_at--694--2171Chr10:18333100..18333119 (20 bp)
ACACGGTTAAGAGCGTGAAGACCCA
LOC_Os10g34970
OsAffx.7997.1.S1_at--362--8971Chr10:18332143..18332164 (22 bp)
TGAAGACCCACGGTACAAGGCGGAG
LOC_Os10g34970
Target Sequence 
CATGGTCACATCAGGAGCCGTCGGACACGGTGGAGAGCGTGAAAGCAAAGATCAAGGATATGTCGGGGATCACGGAGGAC
TTCTGGTTGAGATACGATGGGAAGCAGATGGATGAGGTCGGCAGTCGCACGCTGGCCGATTACGGCATCCATGATCCTGC
TACAGAGATGGAGATCTTCGTGAGGGGGCTGATGGGGAATACTAGGACGCTGTGGGTGAAGCCGTCGGACACGGTTAAGA
GCGTGAAGACCCACGGTACAAGGCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis