Browse Element(s) Details


OsAffx.30676.1.S1_x_at

Description tigr:9638.m03080
TID=OsAffx.30676.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative secretory protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3492010/11secretory protein, putative, expressed
LOC_Os10g349103/11secretory protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34880OsAffx.20232.1.S1_at11/1110+18278231..18283326Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g34884Os.24970.1.A1_at7/1110+18283762..18291710transposon protein, putative, unclassified, expressed
LOC_Os10g34890NANA10+18293402..18298410retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34896OsAffx.20230.1.S1_at10/1110+18298923..18299806hypothetical protein
LOC_Os10g34902NANA10+18301710..18302360ripening-related protein, putative
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042829biological_processdefense response to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30676.1.S1_x_at--763--3991Chr10:18308718..18308742 (25 bp)
CGTGGACTACGCGAAGCAGATGCTC
NONE
OsAffx.30676.1.S1_x_at--1040--5792Chr10:18308690..18308714 (25 bp)
GACGCGTCGTCCTTCATCTGGGACA
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--839--10531Chr10:18308678..18308702 (25 bp)
TTCATCTGGGACACCTTCGAGCAGC
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--737--8912Chr10:18308617..18308641 (25 bp)
TGACCCTGACCGTGGAGGACATCGA
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--652--1651Chr10:18308555..18308579 (25 bp)
AGCGCTCGGTACGTCGGCGGCTACA
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--1145--1032Chr10:18308506..18308530 (25 bp)
AGGTGACCGGCGTGCTGTACCACGA
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--832--6151Chr10:18308322..18308346 (25 bp)
GAGGTTCCTCGACTACTGCGACTCG
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--887--7891Chr10:18308281..18308305 (25 bp)
GGTTCGTGGCGCAGCTCAACGGCAA
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--1120--7531Chr10:18308276..18308300 (25 bp)
GTGGCGCAGCTCAACGGCAAGATGA
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--468--951Chr10:18308251..18308275 (25 bp)
AGGACGGATACAGCGACGACTTCTT
LOC_Os10g34920
OsAffx.30676.1.S1_x_at--488--10551Chr10:18308231..18308255 (25 bp)
TTCTTCGTCCAGATCTCCGGCAAGA
LOC_Os10g34920
Target Sequence 
CGTGGACTACGCGAAGCAGATGCTCGCCGACGCGTCGTCCTTCATCTGGGACACCTTCGAGCAGCCCGGCGACGGCGGCG
ACCGGAAGCCGGTGGACGCGGTGACCCTGACCGTGGAGGACATCGACGGCGTGGCGTTCACCAGCGGCGACGGCATCCAC
CTGAGCGCTCGGTACGTCGGCGGCTACAGCGCCGCCGGCGACGTGAGGGCGGAGGTGACCGGCGTGCTGTACCACGAGGC
GACGCACGTGTGGCAGTGGGACGGCCGCGGCGGCGCCGACGGCGGGCTGATCGAGGGGATCGCCGACTTCGTCCGACTGC
GCGCCGGCTACGCGCCGCCGCACTGGGTGCAGCCCGGGCAGGGCGACCGGTGGGACCAGGGGTACGACGTGACGGCGAGG
TTCCTCGACTACTGCGACTCGCCGGCGGTGGTGCAGGGGTTCGTGGCGCAGCTCAACGGCAAGATGAAGGACGGATACAG
CGACGACTTCTTCGTCCAGATCTCCGGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30676.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis