Browse Element(s) Details


Os.46577.1.S1_at

Description gb:AK063103.1
DB_XREF= gi:32973121
TID=Os.46577.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46577 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0051D19.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C11, full insert sequence.
FL= gb:AK063103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g349409/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34902NANA10+18301710..18302360ripening-related protein, putative
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46577.1.S1_at--704--6031Chr10:18327352..18327376 (25 bp)
GAGATCCATAACCAGAGACTCTATA
LOC_Os10g34940
Os.46577.1.S1_at--878--631Chr10:18327522..18327546 (25 bp)
ATGCTTAGCGTGATAGTTTACTTAC
LOC_Os10g34940
Os.46577.1.S1_at--511--3151Chr10:18327607..18327631 (25 bp)
AATTCTTGCATGATTTGTTTACTTG
LOC_Os10g34940
Os.46577.1.S1_at--203--3611Chr10:18327731..18327755 (25 bp)
CTTTAGTTCCCTCAATTTATCGTCG
LOC_Os10g34940
Os.46577.1.S1_at--78--6951NONE
TTATCCTTGAAATGCAAAACCGGGT
NONE
Os.46577.1.S1_at--233--3311Chr10:18327795..18327818 (24 bp)
CACATCCCCTAGCTTACAAAATCAA
LOC_Os10g34940
Os.46577.1.S1_at--716--7691Chr10:18327830..18327854 (25 bp)
GGGTCTCTCGGCAATATTGTGCCCA
LOC_Os10g34940
Os.46577.1.S1_at--63--32Chr10:18327845..18327869 (25 bp)
ATTGTGCCCAGTTTTGGTTGACGTG
LOC_Os10g34940
Os.46577.1.S1_at--371--4111Chr10:18327870..18327894 (25 bp)
GCGTCTACGTGGGATCCTTTAACTA
LOC_Os10g34940
Os.46577.1.S1_at--301--9811Chr10:18327889..18327913 (25 bp)
TAACTAGGTGTTCGTTCCACGTGGT
LOC_Os10g34940
Os.46577.1.S1_at--1147--3331NONE
CACGTGGTATTGATGTGTCGTTTAC
NONE
Target Sequence 
GAGATCCATAACCAGAGACTCTATAGGTTTTTATTTTATTAGGAGTCATANATGATCTAATTCTTGTATCTATGGATTTA
TCAACNGAAAAAAAANTCCTTACATGTTGGATAGATGGGTATNAGTTCTTTAGCCACTCGTACCCCTTACCTATGGGTAA
AAAATACCTATATGCTTAGCGTGATAGTTTACTTACTTTGAACGTTNATGTATGGTTTAATACTAGTATGGTTTATTTAC
TTGTTATATATGGTTTAATTCTTGCATGATTTGTTTACTTGTATTTGAATGCTAATACTAAAANCAAGGTTACTTAATAT
GATGTCGATAGTTGTTATCGTAATCGTTTAGTTATAGATAAAGGGGAAGGGAGAAGTTCACTTTAGTTCCCTCAATTTAT
CGTCGAGTCTGAAATTTATCCTTGAAATGCAAAACCGGGTACAACACATCCCCTAGCTTACAAAATCAATACAAATAGGG
GGTCTCTCGGCAATATTGTGCCCAGTTTTGGTTGACGTGGCGTCTACGTGGGATCCTTTAACTAGGTGTTCGTTCCACGT
GGTATTGATGTGTCGTTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis