Browse Element(s) Details


Os.37979.2.S1_at

Description gb:NM_197133.1
DB_XREF= gi:37535625
TID=Os.37979.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37979 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative chloroplast inner envelope protein (OSJNBa0051D19.7), mRNA.
PROD=putative chloroplast inner envelope protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3501011/11chloroplast inner envelope protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0045037biological_processprotein import into chloroplast stroma
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37979.2.S1_at--66--5431Chr10:18341191..18341215 (25 bp)
GAAGCCTCTATTTCTCGAGGACAGA
LOC_Os10g35010
Os.37979.2.S1_at--530--8131Chr10:18341120..18341144 (25 bp)
GGACAGCTTGATTGCAGAACCACTT
LOC_Os10g35010
Os.37979.2.S1_at--93--6051Chr10:18341065..18341089 (25 bp)
GAGATCTTTTCGTCAGGCACAGGTG
LOC_Os10g35010
Os.37979.2.S1_at--105--6391Chr10:18341012..18341036 (25 bp)
GATCCCAGCTGATCTCATCATTAAT
LOC_Os10g35010
Os.37979.2.S1_at--522--8451Chr10:18340979..18341003 (25 bp)
GGCCAAGTCGATTGTCCAGGACATT
LOC_Os10g35010
Os.37979.2.S1_at--327--10431Chr10:18340947..18340971 (25 bp)
TTAGGTTGGATAACGCCCTTGTCCA
LOC_Os10g35010
Os.37979.2.S1_at--518--2691Chr10:18340923..18340947 (25 bp)
AAGCTGTTGCTCTGCTTCGGCAGAA
LOC_Os10g35010
Os.37979.2.S1_at--133--5331Chr10:18340605..18340912 (25 bp)
GAAGTGGTCGCATCCTTGAACGACT
LOC_Os10g35010
Os.37979.2.S1_at--787--8971Chr10:18340589..18340613 (25 bp)
TGAACGACTTGCTTGCATGCGACGC
LOC_Os10g35010
Os.37979.2.S1_at--878--5891Chr10:18340521..18340545 (25 bp)
GAGCTGGATGATCTGTACGGCATTT
LOC_Os10g35010
Os.37979.2.S1_at--851--491Chr10:18340402..18340426 (25 bp)
ATCGGCAGGCACACTATCCGTTGCA
LOC_Os10g35010
Target Sequence 
GAAGCCTCTATTTCTCGAGGACAGATTGGTATACAGCAGGTCCGAGGATTGAAAGAAGCAAATTTTCAATTGGACAGCTT
GATTGCAGAACCACTTCGAGAAAACATTTACAAAAAATCCGTTGAGGAGATCTTTTCGTCAGGCACAGGTGAATTTGATG
AAGAGGAAGTGTATGTAAAGATCCCAGCTGATCTCATCATTAATGCTGAGAAGGCCAAGTCGATTGTCCAGGACATTGCG
AAGATTAGGTTGGATAACGCCCTTGTCCAAGCTGTTGCTCTGCTTCGGCAGAAGAAGAAAGATGAAGTGGTCGCATCCTT
GAACGACTTGCTTGCATGCGACGCGGCTGTGCCTGCTTCGAAGCCCCTATCATGGCCTACATCAGGAGAGCTGGATGATC
TGTACGGCATTTACATGAAGAGCATTCCGAAGCCTGAAAAGCTGTCAAGGTTGCAGTATCTGCTTGGCATAAGCGACGAG
AAGGCCGGCCAGATTCGGGATGCCGCATCGGCAGGCACACTATCCGTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37979.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis