Browse Element(s) Details


Os.2544.1.S1_s_at

Description gb:AB114828.1
DB_XREF= gi:32879769
GEN=OsTIP3
TID=Os.2544.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2544 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsTIP3 mRNA for tonoplast intrinsic protein, complete cds.
PROD=tonoplast intrinsic protein
FL= gb:AK111931.1 gb:AB114828.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3505011/11Aquaporin TIP3.1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed
LOC_Os10g35080OsAffx.18523.1.S1_at11/1110+18381976..18385830hypothetical protein
LOC_Os10g35090Os.46382.2.S1_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.1.S1_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.2.S2_x_at11/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35090Os.46382.4.S1_x_at2/1110+18388465..18392252Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35100Os.10498.1.S1_at11/1110+18394352..18395856expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2544.1.S1_s_at--307--151Chr10:18372717..18372741 (25 bp)
ATTAGCTATGTGTGTGTGGTTGTTT
LOC_Os10g35050
Os.2544.1.S1_s_at--394--8671Chr10:18372731..18372755 (25 bp)
TGTGGTTGTTTGTGAGTGTGATTAA
LOC_Os10g35050
Os.2544.1.S1_s_at--942--7731Chr10:18372772..18372796 (25 bp)
GGTGTGTTTGCTTGCCCCAGTGCTG
LOC_Os10g35050
Os.2544.1.S1_s_at--701--4191Chr10:18372786..18372810 (25 bp)
CCCCAGTGCTGGGATGGACGGTCCA
LOC_Os10g35050
Os.2544.1.S1_s_at--642--3971Chr10:18372804..18372828 (25 bp)
CGGTCCAGATCAGCTCATGTACATT
LOC_Os10g35050
Os.2544.1.S1_s_at--71--7271Chr10:18372806..18372830 (25 bp)
GTCCAGATCAGCTCATGTACATTTG
LOC_Os10g35050
Os.2544.1.S1_s_at--878--1271Chr10:18372810..18372834 (25 bp)
AGATCAGCTCATGTACATTTGTTGG
LOC_Os10g35050
Os.2544.1.S1_s_at--213--10871Chr10:18372831..18372855 (25 bp)
TTGGTTGGTTACTCGGATGATGATC
LOC_Os10g35050
Os.2544.1.S1_s_at--933--6291Chr10:18372849..18372873 (25 bp)
GATGATCCGTATGAACAGTGAGCTA
LOC_Os10g35050
Os.2544.1.S1_s_at--1101--5471Chr10:18372861..18372885 (25 bp)
GAACAGTGAGCTACCAGTGTGTAAT
LOC_Os10g35050
Os.2544.1.S1_s_at--723--5911Chr10:18372868..18372892 (25 bp)
GAGCTACCAGTGTGTAATGATAAAT
LOC_Os10g35050
Target Sequence 
ATTAGCTATGTGTGTGTGGTTGTTTGTGAGTGTGATTAAGTGGTTAATAAGGGGTGGTGTGTTTGCTTGCCCCAGTGCTG
GGATGGACGGTCCAGATCAGCTCATGTACATTTGTTGGTTGGTTACTCGGATGATGATCCGTATGAACAGTGAGCTACCA
GTGTGTAATGATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2544.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis