Browse Element(s) Details


Os.2550.1.S1_at

Description gb:AK109476.1
DB_XREF= gi:32994685
TID=Os.2550.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0051D19.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C03, full insert sequence.
FL= gb:AK109476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3502010/11glycosyltransferase, putative, expressed
LOC_Os05g166701/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35040Os.46331.1.S1_s_at11/1110+18367714..18370483Protein kinase domain containing protein, expressed
LOC_Os10g35050Os.2544.1.S1_s_at11/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35050OsAffx.9909.2.S1_x_at2/1110+18371554..18372931Aquaporin TIP3.1, putative, expressed
LOC_Os10g35060Os.2540.1.S1_at11/1110+18373563..18376629Ser/Thr protein phosphatase family protein, expressed
LOC_Os10g35070Os.17491.1.S1_at5/1110+18378181..18381958Alpha-galactosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2550.1.S1_at--209--1131Chr10:18353857..18353881 (25 bp)
AGTGCTGCGAGACCCTATGGCCATC
LOC_Os10g35020
Os.2550.1.S1_at--507--1351Chr10:18353807..18353831 (25 bp)
AGACCACTTACCTCGACAAGCAGAA
LOC_Os10g35020
Os.2550.1.S1_at--1138--2211Chr10:18353792..18353816 (25 bp)
ACAAGCAGAATGTCCGGCCGCATCT
LOC_Os10g35020
Os.2550.1.S1_at--415--10451Chr10:18353701..18353725 (25 bp)
TTAGCTTAGCTCATCAGAACTGTTG
LOC_Os10g35020
Os.2550.1.S1_at--616--511Chr10:18353676..18353700 (25 bp)
ATCGTCATGGATTGTCATCGGCACC
LOC_Os10g35020
Os.2550.1.S1_at--849--3531Chr10:18353637..18353661 (25 bp)
CATGCCATCGTCATGGTGACTTGAA
LOC_Os10g35020
Os.2550.1.S1_at--444--6871Chr10:18353547..18353571 (25 bp)
GTATTGATCCCTAGCAAGTTGCCAA
LOC_Os10g35020
Os.2550.1.S1_at--1156--10151Chr10:18353501..18353525 (25 bp)
TATCTGAAATAATCCGTTGCAACGC
LOC_Os10g35020
Os.2550.1.S1_at--1087--9014Chr10:17075178..17075382 (25 bp)
TGCAACGCACGGGTATTTGGCAATG
NONE
Os.2550.1.S1_at--219--7931Chr10:18353361..18353385 (25 bp)
GGATTTCTTCCAAAATGTCTTCTCC
LOC_Os10g35020
Os.2550.1.S1_at--785--2291NONE
AAATGTCTTCTCCTGGCATATGCGT
NONE
Target Sequence 
AGTGCTGCGAGACCCTATGGCCATCCACAAGCAAGGCTGGGAAGCTCTCAAGACCACTTACCTCGACAAGCAGAATGTCC
GGCCGCATCTCGGCCGCCTCAAGAACACCTTCCTCCAGGCCCTCAAGCTGCTGCCCCATGACAAGGAAACCATGAATTAG
CTTAGCTCATCAGAACTGTTGATCGTCATGGATTGTCATCGGCACCGTCATCGCCATCGCCATGCCATCGTCATGGTGAC
TTGAATTTGTGGTATAAATAGATAGATAGGTAGCTAATTTTTTTTCTTTTTTCAAAATTATTAGTATTTTGTATTGATCC
CTAGCAAGTTGCCAAGATCAGGTATAATCAGTAGCTTATCTGAAATAATCCGTTGCAACGCACGGGTATTTGGCAATGTC
TATAGAAACAATGGTGATATTGTTTGTATGCACCATATTTCTTAACATATCAAGTAAGCCAAATTATCTTATACTAGCAG
AAACCCATATTTTCATGGATTTCTTCCAAAATGTCTTCTCCTGGCATATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis