Browse Element(s) Details


Os.46656.1.A1_at

Description gb:NM_197131.1
DB_XREF= gi:37535621
TID=Os.46656.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46656 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ubiquitinribosomal protein S27a fusion protein (OSJNBa0051D19.8), mRNA.
PROD=putative ubiquitinribosomal protein S27a fusionprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3499011/11ubiquitin fusion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46656.1.A1_at--1074--8511Chr10:18337157..18337181 (25 bp)
TGGACGACGGCCACACGCTAATCTA
LOC_Os10g34990
Os.46656.1.A1_at--740--8431Chr10:18337149..18337173 (25 bp)
GGCCACACGCTAATCTACTATGGTA
LOC_Os10g34990
Os.46656.1.A1_at--672--3811Chr10:18337101..18337125 (25 bp)
CTCCTCGGTCGCATCTGTGGTGGCG
LOC_Os10g34990
Os.46656.1.A1_at--879--5291Chr10:18337051..18337075 (25 bp)
GAAGGCGTACGCGACACCTAAGAAG
LOC_Os10g34990
Os.46656.1.A1_at--754--5551Chr10:18337025..18337049 (25 bp)
GAAAGCATGAGCACCGCAAGGAAGA
LOC_Os10g34990
Os.46656.1.A1_at--250--2931Chr10:18337008..18337032 (25 bp)
AAGGAAGAGCTTGCGGTGCTCCGTC
LOC_Os10g34990
Os.46656.1.A1_at--150--9111Chr10:18336992..18337016 (25 bp)
TGCTCCGTCACTATCGTGTCGATGA
LOC_Os10g34990
Os.46656.1.A1_at--1069--7091Chr10:18336986..18337010 (25 bp)
GTCACTATCGTGTCGATGACGTGAT
LOC_Os10g34990
Os.46656.1.A1_at--196--6031Chr10:18336951..18336975 (25 bp)
GAGAGGCTACGACTGATGTGTCCTA
LOC_Os10g34990
Os.46656.1.A1_at--546--8871Chr10:18336938..18336962 (25 bp)
TGATGTGTCCTAACCCAGAGTGCAA
LOC_Os10g34990
Os.46656.1.A1_at--295--9251Chr10:18336931..18336955 (25 bp)
TCCTAACCCAGAGTGCAAAGACGTT
LOC_Os10g34990
Target Sequence 
TGGACGACGGCCACACGCTAATCTACTATGGTATTCAGGAGGAGTCGACGCTGCACCTCCTCGGTCGCATCTGTGGTGGC
GGCGGCGGCAACAAGAAGCGAAAGAAGAAGGCGTACGCGACACCTAAGAAGGGAAAGCATGAGCACCGCAAGGAAGAGCT
TGCGGTGCTCCGTCACTATCGTGTCGATGACGTGATGGGGAAGGTGGAGAGGCTACGACTGATGTGTCCTAACCCAGAGT
GCAAAGACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46656.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis