Browse Element(s) Details


OsAffx.18521.1.S1_at

Description tigr:9638.m03084
TID=OsAffx.18521.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative polyubiquitin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3496011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18521.1.S1_at--155--5731Chr10:18330480..18330504 (25 bp)
GACTGCATCCGCACGCACATGGAGG
LOC_Os10g34960
OsAffx.18521.1.S1_at--1113--1351Chr10:18330439..18330463 (25 bp)
AGAGCATCATCAAACCCTAACGACT
LOC_Os10g34960
OsAffx.18521.1.S1_at--1149--1991Chr10:18330417..18330441 (25 bp)
ACTCGACCTGCTGCTACGGATGAGA
LOC_Os10g34960
OsAffx.18521.1.S1_at--383--5371Chr10:18330283..18330307 (25 bp)
GAAGACCATGCCGTGCAAGCAACGG
LOC_Os10g34960
OsAffx.18521.1.S1_at--792--1471Chr10:18330266..18330290 (25 bp)
AGCAACGGCTGGTTTTCTCCGGTAT
LOC_Os10g34960
OsAffx.18521.1.S1_at--523--10311Chr10:18330253..18330277 (25 bp)
TTTCTCCGGTATGGAGCTTGCGGAC
LOC_Os10g34960
OsAffx.18521.1.S1_at--1067--6151Chr10:18330201..18330225 (25 bp)
GAGGAGGAGTCGACGTTGTACCTTT
LOC_Os10g34960
OsAffx.18521.1.S1_at--448--7211Chr10:18330198..18330217 (20 bp)
GTCGACGTTGTACCTTTGCGCGCAA
LOC_Os10g34960
OsAffx.18521.1.S1_at--430--10711Chr10:18329095..18329115 (21 bp)
TTGCGCGCAACGACCAATGGCGGCA
LOC_Os10g34960
OsAffx.18521.1.S1_at--893--6371Chr10:18328990..18329014 (25 bp)
GATCCGTGCGAATGTCTTCCGAGCC
LOC_Os10g34960
OsAffx.18521.1.S1_at--143--1671Chr10:18328969..18328993 (25 bp)
AGCCCACGCACGTATGGCGCTGGCG
LOC_Os10g34960
Target Sequence 
GACTGCATCCGCACGCACATGGAGGCGCAGAAACTGATCCAAGAGCATCATCAAACCCTAACGACTCGACCTGCTGCTAC
GGATGAGATGCAGATCTTCGTGAGAGTGCTCGGGGGGAAGAAGGCGACGGCGCTGAAGGTGCAGCCGTCGGACACGGTGG
GAAGCGTGAAGGTGAAGCTGTACTACAGGAAGAAGAAGAAGACCATGCCGTGCAAGCAACGGCTGGTTTTCTCCGGTATG
GAGCTTGCGGACGACCGCACGCTGGCCTCCTACGGCATCGAGGAGGAGTCGACGTTGTACCTTTGCGCGCAACGACCAAT
GGCGGCAGGGAGAAGGATGGTGACCGGCGGGGAGAAGGGGCGGCGGATGGAGGAGATCCAGCTGGCGCTAGAGGCCACCG
TGCGCCCGATCCGTGCGAATGTCTTCCGAGCCCACGCACGTATGGCGCTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis