Browse Element(s) Details


OsAffx.20232.1.S1_at

Description tigr:9638.m03076
TID=OsAffx.20232.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3488011/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34810Os.47895.1.S1_at10/1110+18258193..18261375expressed protein
LOC_Os10g34820OsAffx.30674.1.S1_s_at11/1110+18262486..18265994expressed protein
LOC_Os10g34840Os.26933.1.S1_x_at11/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34840Os.26933.2.S1_x_at7/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34860NANA10+18271953..18275312hAT family dimerisation domain containing protein
LOC_Os10g34880OsAffx.20232.1.S1_at11/1110+18278231..18283326Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g34884Os.24970.1.A1_at7/1110+18283762..18291710transposon protein, putative, unclassified, expressed
LOC_Os10g34890NANA10+18293402..18298410retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34896OsAffx.20230.1.S1_at10/1110+18298923..18299806hypothetical protein
LOC_Os10g34902NANA10+18301710..18302360ripening-related protein, putative
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20232.1.S1_at--250--3591Chr10:18279708..18279732 (25 bp)
CATTTCTTATTGTTGCTTTGGCTTG
LOC_Os10g34880
OsAffx.20232.1.S1_at--664--9171Chr10:18279740..18279764 (25 bp)
TGCCCGAATTCTTCTATATTGCCAA
LOC_Os10g34880
OsAffx.20232.1.S1_at--117--3231Chr10:18279769..18279793 (25 bp)
CAAGTACCTCACCATTTTTCAAGAT
LOC_Os10g34880
OsAffx.20232.1.S1_at--828--2111Chr10:18279897..18280012 (25 bp)
ACATGTGGGCTGTGGTGTACCTTGA
LOC_Os10g34880
OsAffx.20232.1.S1_at--339--5271Chr10:18280505..18280529 (25 bp)
GAATGTTGGCACTTCTAAAGCTGAT
LOC_Os10g34880
OsAffx.20232.1.S1_at--52--5691Chr10:18280533..18280557 (25 bp)
GACATTGGTATTTCTTCTGCTGGTA
LOC_Os10g34880
OsAffx.20232.1.S1_at--350--10071Chr10:18280559..18280694 (25 bp)
TAGTGCTCAAGTTCATGTGCCTAAT
LOC_Os10g34880
OsAffx.20232.1.S1_at--936--6771Chr10:18280703..18280727 (25 bp)
GTTACCTCATTCTCCTATTCATAAT
LOC_Os10g34880
OsAffx.20232.1.S1_at--530--4891Chr10:18280840..18280864 (25 bp)
GCTTTTGTTTCTAAATCTGCTGTTG
LOC_Os10g34880
OsAffx.20232.1.S1_at--766--6391Chr10:18280981..18281005 (25 bp)
GATCTGAATTTTGTTACCCCTCAAG
LOC_Os10g34880
OsAffx.20232.1.S1_at--119--9091Chr10:18281013..18281037 (25 bp)
TGCTAATCATTCCAAACAGTCTGTT
LOC_Os10g34880
Target Sequence 
CATTTCTTATTGTTGCTTTGGCTTGTTTTCTTTGCCCGAATTCTTCTATATTGCCAAGCACCAAGTACCTCACCATTTTT
CAAGATGTTAATAATCTGAGGAATTATGATTGGTCCAAATTCATATATGATTGGTCAATGAACTACATGAAGAAGTTTGT
GAAGACTAACAGCTTGGGAGGATGTTTGTACATGTGGGCTGTGGTGTACCTTGACAATGTTGAATTTGGTGATAACAATG
TTTCAAATGAAATTCCACATCAAAATGTTGTAATTGAGGAAAATGTAATTGAGAATGTTGGCACTTCTAAAGCTGATGAT
GACATTGGTATTTCTTCTGCTGGTATTAGTGCTCAAGTTCATGTGCCTAATGATAATGTGTTACCTCATTCTCCTATTCA
TAATGCTTTTCATGGAAATGAAGATGCTTTTGTTTCTAAATCTGCTGTTGAACTTAATGATTCAAGACAATGTGATGATG
ATCTGAATTTTGTTACCCCTCAAGTTGGTAATGCTAATCATTCCAAACAGTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis