Browse Element(s) Details


OsAffx.30674.1.S1_s_at

Description gb:AK058401.1
DB_XREF= gi:32968419
TID=OsAffx.30674.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B06, full insert sequence.
FL= gb:AK058401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3482011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os10g34810Os.47895.1.S1_at10/1110+18258193..18261375expressed protein
LOC_Os10g34820OsAffx.30674.1.S1_s_at11/1110+18262486..18265994expressed protein
LOC_Os10g34840Os.26933.1.S1_x_at11/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34840Os.26933.2.S1_x_at7/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34860NANA10+18271953..18275312hAT family dimerisation domain containing protein
LOC_Os10g34880OsAffx.20232.1.S1_at11/1110+18278231..18283326Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g34884Os.24970.1.A1_at7/1110+18283762..18291710transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0009658biological_processchloroplast organization and biogenesis
GO:0005634cellular_componentnucleus
GO:0009507cellular_componentchloroplast
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30674.1.S1_s_at--1065--10691Chr10:18265491..18265515 (25 bp)
TTGCTGAAATCCCAACTTACCATCA
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--14--8571Chr10:18265526..18265550 (25 bp)
TGGATTGCTCCTTAATTTCTTCGTC
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--42--3131Chr10:18265539..18265563 (25 bp)
AATTTCTTCGTCTACTTCCAAACAT
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--152--2511Chr10:18265589..18265613 (25 bp)
AACATGTTCTTTTACTGGCACTCGA
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--1059--3031Chr10:18265623..18265647 (25 bp)
AATCCTCTGGATCTCTTTAGTGCTG
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--260--7871Chr10:18265652..18265676 (25 bp)
GGTTTGGAATTCACACCACCATATA
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--663--5431Chr10:18265685..18265709 (25 bp)
GAACCATGCTATCTGTGAGACTCTG
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--263--2491Chr10:18265710..18265734 (25 bp)
AACAGCCTTGTTAGATTGCACGAGA
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--582--1491Chr10:18265734..18265758 (25 bp)
AGCACAAGTGCTGTGGTTGTTCCCA
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--520--6631Chr10:18265749..18265773 (25 bp)
GTTGTTCCCACGAGAATGCGATGTT
LOC_Os10g34820
OsAffx.30674.1.S1_s_at--1017--1491Chr10:18265821..18265845 (25 bp)
AGCACATGCTCGTATGGTTCTCTGA
LOC_Os10g34820
Target Sequence 
TTGCTGAAATCCCAACTTACCATCATGAAATCCTCTGGATTGCTCCTTAATTTCTTCGTCTACTTCCAAACATTAGCAGA
AACAAACGCAGATTACTCAACATGTTCTTTTACTGGCACTCGACATTTGAGTAATCCTCTGGATCTCTTTAGTGCTGACA
TGGTTTGGAATTCACACCACCATATAATAGGATTGAACCATGCTATCTGTGAGACTCTGAACAGCCTTGTTAGATTGCAC
GAGAGCACAAGTGCTGTGGTTGTTCCCACGAGAATGCGATGTTGCAAATTCGATCGGTTTGTGTATGAATACGATGTAAT
GTAGGTATGTAGCACATGCTCGTATGGTTCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30674.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis