Browse Element(s) Details


Os.46658.1.S1_at

Description gb:NM_197111.1
DB_XREF= gi:37535581
TID=Os.46658.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46658 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative monoterpene synthase (OSJNBb0049A16.6), mRNA.
PROD=putative monoterpene synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3479011/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os10g34810Os.47895.1.S1_at10/1110+18258193..18261375expressed protein
LOC_Os10g34820OsAffx.30674.1.S1_s_at11/1110+18262486..18265994expressed protein
LOC_Os10g34840Os.26933.1.S1_x_at11/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34840Os.26933.2.S1_x_at7/1110+18268952..18269791ripening-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0016099biological_processmonoterpenoid biosynthesis
GO:0042408molecular_functionmyrcene/(E)-beta-ocimene synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46658.1.S1_at--382--631Chr10:18244212..18244236 (25 bp)
ATGCTACAGGGCTATTTACACTGTT
LOC_Os10g34790
Os.46658.1.S1_at--383--6851Chr10:18243853..18243877 (25 bp)
GTTTGATGGATTAATGACTGAGGCA
LOC_Os10g34790
Os.46658.1.S1_at--883--10051Chr10:18243814..18243838 (25 bp)
TAGTCATGTTCCCTCCTCAGAGGAT
LOC_Os10g34790
Os.46658.1.S1_at--1108--6611Chr10:18243807..18243831 (25 bp)
GTTCCCTCCTCAGAGGATTACCTAA
LOC_Os10g34790
Os.46658.1.S1_at--197--7751Chr10:18243777..18243801 (25 bp)
GGTGTTATCACTTCAGGAGTACCAC
LOC_Os10g34790
Os.46658.1.S1_at--474--8011Chr10:18243762..18243786 (25 bp)
GGAGTACCACTTATGTTTTTACACT
LOC_Os10g34790
Os.46658.1.S1_at--135--1591Chr10:18243707..18243731 (25 bp)
AGCTCATTGACAACATCCCTCCTGT
LOC_Os10g34790
Os.46658.1.S1_at--1074--10511Chr10:18243660..18243684 (25 bp)
TTCAGACTCTGGGATGACATAGGCA
LOC_Os10g34790
Os.46658.1.S1_at--634--3891Chr10:18243652..18243676 (25 bp)
CTGGGATGACATAGGCAACGCCAAG
LOC_Os10g34790
Os.46658.1.S1_at--1157--2611Chr10:18243228..18243252 (25 bp)
AACCGTGAGAGCTTCTTCTCCGGGA
LOC_Os10g34790
Os.46658.1.S1_at--1072--811Chr10:18243156..18243180 (25 bp)
ATGGTCGGCGTCATGCACGGCCACG
LOC_Os10g34790
Target Sequence 
ATGCTACAGGGCTATTTACACTGTTACAAATGATATCGCAGATATGGTCGAGAGAGAACACGGAGTAAACCCTATCAATC
ATTTGAAGAAAGCTTGGGCAGTGCTGTTTGATGGATTAATGACTGAGGCAAAATGGTTGACCNATAGTCATGTTCCCTCC
TCAGAGGATTACCTAAGAAATGGTGTTATCACTTCAGGAGTACCACTTATGTTTTTACACTTATTATTCATGCTAGGGCA
TGATGCAGCAGAGCTCATTGACAACATCCCTCCTGTCATCTCCTGCCCAGCAAAAATCTTCAGACTCTGGGATGACATAG
GCAACGCCAAGGAAGGGTTGGATGGATCATACAAGGAGTTGTACCTCAGGGAGAACCCGGGGCTCGCCGCCAGCGAAGCG
GAGGAGCACATGCGCGGCNTGATCNCCAGGGAGTGGGAGAAGCTCAACCGTGAGAGCTTCTTCTCCGGGANGGCCTTCCC
CGCCNGCTTCACGCAGGCGGCGCTCAATGCCGCCAGGATGGTCGGCGTCATGCACGGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis