Browse Element(s) Details


Os.12267.1.S1_at

Description gb:AK101865.1
DB_XREF= gi:32987074
TID=Os.12267.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070C14, full insert sequence.
FL= gb:AK101865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3474011/11Protein arginine N-methyltransferase 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34704NANA10+18194187..18194798hypothetical protein
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
GO:0016274molecular_functionprotein-arginine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12267.1.S1_at--569--7891Chr10:18222433..18222457 (25 bp)
GGTTCTGTTACCATATCTCAAAGCC
LOC_Os10g34740
Os.12267.1.S1_at--79--7531Chr10:18222652..18222676 (25 bp)
GTGGACTGCAGGATCTCATATTTGT
LOC_Os10g34740
Os.12267.1.S1_at--822--10191Chr10:18222670..18222694 (25 bp)
TATTTGTTTTTCCTGTGCACGTTGA
LOC_Os10g34740
Os.12267.1.S1_at--471--5091Chr10:18222686..18222710 (25 bp)
GCACGTTGAAGCTTACTTGCAATTT
LOC_Os10g34740
Os.12267.1.S1_at--427--2671Chr10:18222726..18222750 (25 bp)
AAGCGTCACGTACTGACATCCTGAT
LOC_Os10g34740
Os.12267.1.S1_at--592--6311Chr10:18222748..18222772 (25 bp)
GATGACAAGCGTCTTTTGGTTCCTA
LOC_Os10g34740
Os.12267.1.S1_at--150--7351Chr10:18222807..18222831 (25 bp)
GTGCAACTCCGCTAGAATTCGTACA
LOC_Os10g34740
Os.12267.1.S1_at--713--9591Chr10:18222920..18222944 (25 bp)
TCATAATTACATGCCGACCAAGGGT
LOC_Os10g34740
Os.12267.1.S1_at--19--4831Chr10:18222975..18222999 (25 bp)
GCTCATGTCATTTGGTTACGCTTTG
LOC_Os10g34740
Os.12267.1.S1_at--781--3171Chr10:18223051..18223075 (25 bp)
AATTGTCAACATTCATGCGGCCCTT
LOC_Os10g34740
Os.12267.1.S1_at--363--3391Chr10:18223088..18223112 (25 bp)
CAGCGGCGTGATTTTCTGATTTTCC
LOC_Os10g34740
Target Sequence 
GGTTCTGTTACCATATCTCAAAGCCAGCAACATGCTCGCTTCCTCAACATCTGCCTGAAATATTTTACTAGAGATCAATG
GTATGTTAAAGAATCGGTGATGAAATAAGACGGGGGTAGCTTCAAGAGTGGACTGCAGGATCTCATATTTGTTTTTCCTG
TGCACGTTGAAGCTTACTTGCAATTTTGGAGAATCTTTGACAAGCGTCACGTACTGACATCCTGATGACAAGCGTCTTTT
GGTTCCTATTTGGAAAGCTGGATTTTTTTTTTNAGGAATTGAGTGCAACTCCGCTAGAATTCGTACAGAAATCCTTTTTT
TCTTGAAAAGGGCCTGATTAGATTAACAGCCTGATGATCATGTGCATTCAGCTGATGAAAGGAGCAGTGAGAAACTCATA
ATTACATGCCGACCAAGGGTGGGATAGGTTTTCCTGTTAAGTTTGTCTTAGCTCATGTCATTTGGTTACGCTTTGTTATT
TTTTCCTATAGACTAAGATAGCAATGTTCTTTTCTTTGTAAGAACAAATTGTCAACATTCATGCGGCCCTTGTGGTAGGC
TATNNCAGCGGCGTGATTTTCTGATTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis