Browse Element(s) Details


OsAffx.20234.1.S1_at

Description tigr:9638.m03066
TID=OsAffx.20234.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3477011/11Ripening related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os10g34810Os.47895.1.S1_at10/1110+18258193..18261375expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20234.1.S1_at--138--7191Chr10:18235826..18235850 (25 bp)
GTCGCGGTTGTTGTCGCTGTCCTCC
LOC_Os10g34770
OsAffx.20234.1.S1_at--988--4131Chr10:18235824..18235848 (25 bp)
CGCGGTTGTTGTCGCTGTCCTCCTT
LOC_Os10g34770
OsAffx.20234.1.S1_at--834--7251Chr10:18235808..18235832 (25 bp)
GTCCTCCTTGCCATCCTTGAGATGC
LOC_Os10g34770
OsAffx.20234.1.S1_at--678--10691Chr10:18235801..18235825 (25 bp)
TTGCCATCCTTGAGATGCCGTCGTG
LOC_Os10g34770
OsAffx.20234.1.S1_at--321--3631Chr10:18235793..18235817 (25 bp)
CTTGAGATGCCGTCGTGTGCCGTCG
LOC_Os10g34770
OsAffx.20234.1.S1_at--822--2211Chr10:18235741..18235765 (25 bp)
ACAAGCCGGGCCACCACGACGGCGG
LOC_Os10g34770
OsAffx.20234.1.S1_at--820--4611Chr10:18235627..18235651 (25 bp)
GCGAGCTGATCGTCGCGCTGTCGAC
LOC_Os10g34770
OsAffx.20234.1.S1_at--801--3971Chr10:18235580..18235604 (25 bp)
CGGTGCCACAGGAGGATCCGCATCA
LOC_Os10g34770
OsAffx.20234.1.S1_at--996--7271Chr10:18235578..18235602 (25 bp)
GTGCCACAGGAGGATCCGCATCACG
LOC_Os10g34770
OsAffx.20234.1.S1_at--940--8011Chr10:18235570..18235594 (25 bp)
GGAGGATCCGCATCACGCCGAGCGA
LOC_Os10g34770
OsAffx.20234.1.S1_at--896--7971Chr10:18235567..18235591 (25 bp)
GGATCCGCATCACGCCGAGCGAACA
LOC_Os10g34770
Target Sequence 
GTCGCGGTTGTTGTCGCTGTCCTCCTTGCCATCCTTGAGATGCCGTCGTGTGCCGTCGCGCGGCGGCACCACCACGACCA
CCACGACAAGCCGGGCCACCACGACGGCGGGTTCCCGGCGGTGATGACGGTGAACGGGTTCGAGAAGGGGGAGGACGGCG
GCGGGCCGGCGGCGTGCGACGGGCACTACCACAGCGACGGCGAGCTGATCGTCGCGCTGTCGACGGAGTGGTTCGCCGGC
GGGCGGCGGTGCCACAGGAGGATCCGCATCACGCCGAGCGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis