Browse Element(s) Details


Os.46520.1.S1_at

Description gb:AK069090.1
DB_XREF= gi:32979114
TID=Os.46520.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0049A16.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006J20, full insert sequence.
FL= gb:AK069090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3472011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34704NANA10+18194187..18194798hypothetical protein
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46520.1.S1_at--1078--2051Chr10:18212638..18212662 (25 bp)
ACTTCCTGGTTTTAGCTGGGTCGAT
LOC_Os10g34720
Os.46520.1.S1_at--955--2371Chr10:18212673..18212697 (25 bp)
AAACCCATGTGTTTGGATCCGAGGA
LOC_Os10g34720
Os.46520.1.S1_at--365--6611Chr10:18212696..18212720 (25 bp)
GATTGGTCACATCCACAGCAGAAGG
LOC_Os10g34720
Os.46520.1.S1_at--642--10191Chr10:18212771..18212795 (25 bp)
TATATCCCGGATACAAGCTTCTTGC
LOC_Os10g34720
Os.46520.1.S1_at--579--1331Chr10:18212823..18212847 (25 bp)
AGAGGATTCTTCGTTATCACAGTGA
LOC_Os10g34720
Os.46520.1.S1_at--910--1511Chr10:18212876..18212900 (25 bp)
AGCATGCCAGCTACAAAACCAATCA
LOC_Os10g34720
Os.46520.1.S1_at--207--7951Chr10:18212919..18212943 (25 bp)
GGATATGTATAGACTGCCACACTGC
LOC_Os10g34720
Os.46520.1.S1_at--181--4411Chr10:18212934..18212958 (25 bp)
GCCACACTGCATTCAAGTTCATTTG
LOC_Os10g34720
Os.46520.1.S1_at--548--3751Chr10:18213054..18213078 (25 bp)
CTCTTATCCTTTTTCGAGCTAGAAA
LOC_Os10g34720
Os.46520.1.S1_at--1141--9831Chr10:18213081..18213105 (25 bp)
TACAATAGGAACTTCTACACTGCTG
LOC_Os10g34720
Os.46520.1.S1_at--1035--1931Chr10:18213099..18213123 (25 bp)
ACTGCTGGCAACTGACCTTTTTACA
LOC_Os10g34720
Target Sequence 
ACTTCCTGGTTTTAGCTGGGTCGATTCTAACAAAAAAACCCATGTGTTTGGATCCGAGGATTGGTCACATCCACAGCAGA
AGGACATATATGAAAAACTTGAGGAACTCACTACGAGGATAAAGGAGGAAGGTTATATCCCGGATACAAGCTTCTTGCCA
TGTAATTTAGAAGACATCGCAAAAGAGAGGATTCTTCGTTATCACAGTGAGAGAATAGCTGTAGCTTTTGCTTTGATAAG
CATGCCAGCTACAAAACCAATCATTGTGAAGAAGAATTTGCGGATATGTATAGACTGCCACACTGCATTCAAGTTCATTT
GTAAGGTAGAAAGAAGGGATATTATTGTGAGAGATAATTCCAGGTTTCACCATTTTGTGAATGGTAGGTGTTCCTGTGGA
GATTACTGGTGATTAACTCTTATCCTTTTTCGAGCTAGAAAGGTACAATAGGAACTTCTACACTGCTGGCAACTGACCTT
TTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis