Browse Element(s) Details


OsAffx.20235.1.S1_x_at

Description gb:NM_197108.1
DB_XREF= gi:37535575
TID=OsAffx.20235.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0049A16.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3476011/11Ripening-related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_x_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34770OsAffx.20234.1.S1_at11/1110+18235392..18235880Ripening related protein, putative
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20235.1.S1_x_at--100--6351Chr10:18231773..18231797 (25 bp)
GATGCTCGTGCTGCTGCTCGCGTCG
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--365--8371Chr10:18231694..18231718 (25 bp)
GGCGTGGACTCGCATCTGCCGCCGG
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--662--5751Chr10:18231562..18231586 (25 bp)
GACGGGCGCTACCACAGCGACCGGT
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--750--2131Chr10:18231549..18231573 (25 bp)
ACAGCGACCGGTCCCTGGTGGCGGC
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--1155--7651Chr10:18231481..18231505 (25 bp)
GGGATCCGCATCACGAGCCGGCAGA
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--191--551Chr10:18231478..18231502 (25 bp)
ATCCGCATCACGAGCCGGCAGAACG
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--962--3411Chr10:18231460..18231484 (25 bp)
CAGAACGGCCGCTCCGTGGTGGCCA
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--612--9271Chr10:18231448..18231472 (25 bp)
TCCGTGGTGGCCACCGTCGTCGACG
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--1099--4391Chr10:18231411..18231435 (25 bp)
GCCACGGCGGCTGCAAGGACGACAT
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--300--9011Chr10:18231400..18231424 (25 bp)
TGCAAGGACGACATCGTCGACACCT
LOC_Os10g34760
OsAffx.20235.1.S1_x_at--280--8671Chr10:18231366..18231390 (25 bp)
TGTGGAGCGCGCTCGGCCTCGACAC
LOC_Os10g34760
Target Sequence 
GATGCTCGTGCTGCTGCTCGCGTCGTGCGCCGCCGCGCGGCGCCACGGCAAGCCGGACCCGTGCGACGGCGGCGGCGGCG
GCGTGGACTCGCATCTGCCGCCGGGGATGCGGCGGTGCTCGTCGCCGGCGGTGTCGGAGGACGGGACGCCGGCGGTGATG
ACGGTGAACGGGTTCGAGGAGGGGGAGGACGGCGGCGGGCCGGCGGCGTGCGACGGGCGCTACCACAGCGACCGGTCCCT
GGTGGCGGCGCTGTCGACGGGGTGGTTCGCCGGCGGCCGCCGCTGCCACCGCGGGATCCGCATCACGAGCCGGCAGAACG
GCCGCTCCGTGGTGGCCACCGTCGTCGACGAGTGCGACTCCCGCCACGGCGGCTGCAAGGACGACATCGTCGACACCTCC
GCCGCCGTGTGGAGCGCGCTCGGCCTCGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20235.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis