Browse Element(s) Details


Os.8368.1.S1_at

Description gb:AK102087.1
DB_XREF= gi:32987296
TID=Os.8368.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin (OSJNBb0049A16.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082N17, full insert sequence.
FL= gb:AK058591.1 gb:AK102087.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3471011/11Myosin head family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34700Os.46840.1.S1_x_at11/1110+18175013..18176806expressed protein
LOC_Os10g34700Os.46840.1.S1_at11/1110+18175013..18176806expressed protein
LOC_Os10g34702NANA10+18179086..18180586hypothetical protein
LOC_Os10g34704NANA10+18194187..18194798hypothetical protein
LOC_Os10g34710Os.8368.1.S1_at11/1110+18201498..18210207Myosin head family protein, expressed
LOC_Os10g34720Os.46520.1.S1_at11/1110+18210953..18213188pentatricopeptide, putative, expressed
LOC_Os10g34730OsAffx.30673.1.S1_at11/1110+18215597..18216559GRAM domain containing protein, expressed
LOC_Os10g34740Os.12267.1.S1_at11/1110+18218598..18223112Protein arginine N-methyltransferase 6, putative, expressed
LOC_Os10g34750Os.8285.1.S1_at11/1110+18223346..18229721DNA ligase, putative, expressed
LOC_Os10g34760OsAffx.20235.1.S1_x_at11/1110+18231326..18231829Ripening-related protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0009504cellular_componentcell plate
GO:0009524cellular_componentphragmoplast
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8368.1.S1_at--950--5371Chr10:18209671..18209695 (25 bp)
GAAGAAGGACTTCGGCTCGCGCATA
LOC_Os10g34710
Os.8368.1.S1_at--90--7631Chr10:18209697..18209721 (25 bp)
GGGAGACGAAGGTGATCCTCAACAA
LOC_Os10g34710
Os.8368.1.S1_at--13--5511Chr10:18209782..18209806 (25 bp)
GAACACATCCAAGTTTTCATGAGCT
LOC_Os10g34710
Os.8368.1.S1_at--744--1291Chr10:18209825..18209849 (25 bp)
AGATGCGGCGCTGGTATTTTACAAA
LOC_Os10g34710
Os.8368.1.S1_at--230--7331Chr10:18209870..18209894 (25 bp)
GTGCTAGAGTTTCTTCTCAACTGAG
LOC_Os10g34710
Os.8368.1.S1_at--471--2351Chr10:18209903..18209927 (25 bp)
AAAGCCCAGCGTTTTGGGCTGGATT
LOC_Os10g34710
Os.8368.1.S1_at--435--7571Chr10:18209941..18209965 (25 bp)
GGGCGAGTTTGTATAGTTCTTCCAC
LOC_Os10g34710
Os.8368.1.S1_at--134--10191Chr10:18209952..18209976 (25 bp)
TATAGTTCTTCCACTGAGGCCTTCT
LOC_Os10g34710
Os.8368.1.S1_at--450--10811Chr10:18210078..18210102 (25 bp)
TTGTCCGATCTCAGCTTGTAGGTCT
LOC_Os10g34710
Os.8368.1.S1_at--1104--6851Chr10:18210114..18210138 (25 bp)
GTTTGTATCAGGTATTATCATCACT
LOC_Os10g34710
Os.8368.1.S1_at--638--2291Chr10:18210150..18210174 (25 bp)
AAATGTATCTGCCTGTGCCAACGCA
LOC_Os10g34710
Target Sequence 
GAAGAAGGACTTCGGCTCGCGCATAAGGGAGACGAAGGTGATCCTCAACAAGCTGGGGAGCGGCAACGAATCGTCGCCCA
ACTCGGTGAAGCGAAAATGGTGGGGGAGGCTGAACACATCCAAGTTTTCATGAGCTACCATGTAATGGTGTAGAAGATGC
GGCGCTGGTATTTTACAAAGCCGGCGAGGTTGGTTGCTAGTGCTAGAGTTTCTTCTCAACTGAGTATTGGTGNAAAGCCC
AGCGTTTTGGGCTGGATTTGTGATTTGTGGAGGGCGAGTTTGTATAGTTCTTCCACTGAGGCCTTCTTTGCAGGGGCCAA
AAGAACCACTGAGTTGTGATGTAATTACTTGTTAAGATAGCTGCTAAACGGGAGGAGATTGGAGATTGNNNNNNNTTCAG
TGCCGTTTCCTTCTCTTGTCCGATCTCAGCTTGTAGGTCTGTAGTTTTGTAGTTTGTATCAGGTATTATCATCACTGAAT
AATGGGAAAATGTATCTGCCTGTGCCAACGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis