Browse Element(s) Details


Os.26933.1.S1_x_at

Description gb:AK102387.1
DB_XREF= gi:32987596
TID=Os.26933.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0051D19.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092D15, full insert sequence.
FL= gb:AK102387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3484011/11ripening-related protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34790Os.46658.1.S1_at11/1110+18243100..18246122Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os10g34810Os.47895.1.S1_at10/1110+18258193..18261375expressed protein
LOC_Os10g34820OsAffx.30674.1.S1_s_at11/1110+18262486..18265994expressed protein
LOC_Os10g34840Os.26933.1.S1_x_at11/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34840Os.26933.2.S1_x_at7/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34860NANA10+18271953..18275312hAT family dimerisation domain containing protein
LOC_Os10g34880OsAffx.20232.1.S1_at11/1110+18278231..18283326Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g34884Os.24970.1.A1_at7/1110+18283762..18291710transposon protein, putative, unclassified, expressed
LOC_Os10g34890NANA10+18293402..18298410retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26933.1.S1_x_at--702--2571Chr10:18269183..18269207 (25 bp)
AACGGCTCCGAGTGCTGCCAGGACG
LOC_Os10g34840
Os.26933.1.S1_x_at--422--8111Chr10:18269203..18269227 (25 bp)
GGACGGCGTCCAGTACATGACGTAC
LOC_Os10g34840
Os.26933.1.S1_x_at--715--9151Chr10:18269486..18269510 (25 bp)
TGCGACAGCGACCACAACTTCGAGC
LOC_Os10g34840
Os.26933.1.S1_x_at--448--8091Chr10:18269520..18269544 (25 bp)
GGAACAACATCGTCGACGGGTCGCC
LOC_Os10g34840
Os.26933.1.S1_x_at--1099--6211Chr10:18269585..18269609 (25 bp)
GAGGCCCAGATCACCTGGTCCGATG
LOC_Os10g34840
Os.26933.1.S1_x_at--256--8611Chr10:18269600..18269624 (25 bp)
TGGTCCGATGCTTGACGACGACGAC
LOC_Os10g34840
Os.26933.1.S1_x_at--96--5791Chr10:18269616..18269640 (25 bp)
GACGACGACGACACACGTAGTGACG
LOC_Os10g34840
Os.26933.1.S1_x_at--461--6951Chr10:18269640..18269664 (25 bp)
GTAGACGCCATGTAACACGGCCGTA
LOC_Os10g34840
Os.26933.1.S1_x_at--1055--3331Chr10:18269655..18269679 (25 bp)
CACGGCCGTATAATTTCCCATTAAT
LOC_Os10g34840
Os.26933.1.S1_x_at--808--4891Chr10:18269682..18269706 (25 bp)
GCTTATATATATTCCCTAACAGTGA
LOC_Os10g34840
Os.26933.1.S1_x_at--885--6271Chr10:18269705..18269729 (25 bp)
GATGTATCGTAATTTTTCTTTTGTA
LOC_Os10g34840
Target Sequence 
AACGGCTCCGAGTGCTGCCAGGACGGCGTCCAGTACATGACGTACGCCTGCTCGCCGCCCGTCGCCGCCGGCGGCACCGG
CACCGCGGCCCTCCTCACGCTCAACAGCTTCGCCGACGGCGGGGACGGCGGCGGCGCGCCGTCCTGCACGGGGAGGTTCT
ACGACGACGGCCAGCTGGTGGTGGCGCTGTCCACGGGGTGGTTCGACGGGAGGAGCCGGTGCGAGAAGGACGTCGTCATC
CGGGCGAGCGGCGGCGCGTCCGTGACGGCCATGGTCGTCGACGAGTGCGACTCCCAGCGCGGCTGCGACAGCGACCACAA
CTTCGAGCCGCCGTGCCGGAACAACATCGTCGACGGGTCGCCGGCGGTGTGGGACGCGCTGGGGCTCAACAAGGACGACG
GCGAGGCCCAGATCACCTGGTCCGATGCTTGACGACGACGACGACACACGTAGTGACGTAGACGCCATGTAACACGGCCG
TATAATTTCCCATTAATAAGCTTATATATATTCCCTAACAGTGATGTATCGTAATTTTTCTTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26933.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis