Browse Element(s) Details


Os.24970.1.A1_at

Description gb:CA763210
DB_XREF= gi:25807249
DB_XREF=BR060013A20D01.ab1
CLONE=BR060013A20D01.ab1
TID=Os.24970.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24970 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565636.1 (A.thaliana) Mutator-like transposase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g348847/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34810Os.47895.1.S1_at10/1110+18258193..18261375expressed protein
LOC_Os10g34820OsAffx.30674.1.S1_s_at11/1110+18262486..18265994expressed protein
LOC_Os10g34840Os.26933.1.S1_x_at11/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34840Os.26933.2.S1_x_at7/1110+18268952..18269791ripening-related protein, putative, expressed
LOC_Os10g34860NANA10+18271953..18275312hAT family dimerisation domain containing protein
LOC_Os10g34880OsAffx.20232.1.S1_at11/1110+18278231..18283326Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g34884Os.24970.1.A1_at7/1110+18283762..18291710transposon protein, putative, unclassified, expressed
LOC_Os10g34890NANA10+18293402..18298410retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34896OsAffx.20230.1.S1_at10/1110+18298923..18299806hypothetical protein
LOC_Os10g34902NANA10+18301710..18302360ripening-related protein, putative
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24970.1.A1_at--724--10031Chr10:18284983..18285007 (25 bp)
TAGAGCTCAGTTTGTGCCTGTCTAC
LOC_Os10g34884
Os.24970.1.A1_at--513--7291Chr10:18284970..18284994 (25 bp)
GTGCCTGTCTACTTCAAATATGATT
LOC_Os10g34884
Os.24970.1.A1_at--1004--3811Chr10:18284944..18284968 (25 bp)
CTGCCCTTTTATACAAAGCACAGCG
LOC_Os10g34884
Os.24970.1.A1_at--169--2731Chr10:18284929..18284953 (25 bp)
AAGCACAGCGCTGAGTGAGGGAACA
LOC_Os10g34884
Os.24970.1.A1_at--305--1251NONE
AGTTGGACCCCAACACAGTGTGATG
NONE
Os.24970.1.A1_at--59--11NONE
GCCAAAAACCCTATGGTTCAACTAT
NONE
Os.24970.1.A1_at--975--5911Chr10:18284742..18284766 (25 bp)
GAGCAGGCATCGGAACTATATAATC
LOC_Os10g34884
Os.24970.1.A1_at--19--5331NONE
GAAGTGTTTGTGTCCCCTAATAGCA
NONE
Os.24970.1.A1_at--481--8711NONE
TGTCCCCTAATAGCATCCAGCAAGA
NONE
Os.24970.1.A1_at--193--5531Chr10:18284556..18284580 (25 bp)
GAAAACTTCGGTTGCATTTGTGGGA
LOC_Os10g34884
Os.24970.1.A1_at--21--8011Chr10:18284521..18284545 (25 bp)
GGATGGAATGCTATGTTCACATATC
LOC_Os10g34884
Target Sequence 
TAGAGCTCAGTTTGTGCCTGTCTACTTCAAATATGATTTCTGCCCTTTTATACAAAGCACAGCGCTGAGTGAGGGAACAA
ATAGCAGATTCAAAAGAGGAGTTGGACCCCAACACAGTGTGATGAGTTTTATGAAGGAATATGAGAACATAAATGATACT
ATCTTTGATACTGAGTACAGCAAAGATTTCCAATCAAGGACAAAAATGCCAAAAACCCTATGGTTCAACTATCTCATTGA
AGAGCAGGCATCGGAACTATATAATCTAGACATATTCAGAAAATTCCAAAATGAATTAAAGGATACTTTAAGGTTGCAAG
TATCTGTGATACAACAGGGCAAAGTGTATGAAGTGTTTGTGTCCCCTAATAGCATCCAGCAAGAATATAGACAAAGGAAA
CATATAGTGATCATTGACTTACCAAATGAAAACTTCGGTTGCATTTGTGGGAAGTTCTCTAAGGATGGAATGCTATGTTC
ACATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24970.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis