Browse Element(s) Details


Os.8640.1.S1_at

Description gb:AK058676.1
DB_XREF= gi:32968694
TID=Os.8640.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013128A13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H08, full insert sequence.
FL= gb:AK099032.1 gb:AK058676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1373011/11Translocase of chloroplast 34, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13700Os.27639.1.S1_x_at9/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13700OsAffx.8980.1.S1_at5/113+7389372..7394254transposon protein, putative, unclassified
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein
LOC_Os03g13730OsAffx.3231.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730Os.8640.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730OsAffx.28716.1.S1_s_at1/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740Os.6244.1.S1_x_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13740Os.6244.1.S1_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0019750biological_processchloroplast transport
GO:0045036biological_processprotein targeting to chloroplast
GO:0009707cellular_componentchloroplast outer membrane
GO:0003924molecular_functionGTPase activity
GO:0004888molecular_functiontransmembrane receptor activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8640.1.S1_at--1097--5271Chr03:7413724..7413746 (23 bp)
GAAGGTTCTCCCTGATGGAACTCCA
LOC_Os03g13730
Os.8640.1.S1_at--362--5471Chr03:7413707..7413731 (25 bp)
GAACTCCATGGATTCCGAACTTGAT
LOC_Os03g13730
Os.8640.1.S1_at--1098--6531Chr03:7413676..7413700 (25 bp)
GATTACTACTGTTGTCTCAAACGGG
LOC_Os03g13730
Os.8640.1.S1_at--715--6251Chr03:7413618..7413642 (25 bp)
GATGGTCCAAATCCCAACAATCGCT
LOC_Os03g13730
Os.8640.1.S1_at--1012--4711Chr03:7413596..7413620 (25 bp)
GCTGGAAGATGTTCATACCGCTCAT
LOC_Os03g13730
Os.8640.1.S1_at--880--311Chr03:7413583..7413606 (24 bp)
ATACCGCTCATCCTTATGGTGGAGT
LOC_Os03g13730
Os.8640.1.S1_at--1111--5311Chr03:7413432..7413456 (25 bp)
GAAGGGCCATTCATGCTGACATATC
LOC_Os03g13730
Os.8640.1.S1_at--848--551Chr03:7413326..7413350 (25 bp)
ATCCGGCAACCGCAAGGCTTGAGCT
LOC_Os03g13730
Os.8640.1.S1_at--860--5271Chr03:7413298..7413322 (25 bp)
GAATGATACCGCATGCATCGTGACC
LOC_Os03g13730
Os.8640.1.S1_at--419--131Chr03:7413272..7413296 (25 bp)
ATTCAATTCTCTGTGCTTTTCTTTT
LOC_Os03g13730
Os.8640.1.S1_at--991--10391Chr03:7413250..7413274 (25 bp)
TTTTGCGCTCTATTCCAGTGATCTA
LOC_Os03g13730
Target Sequence 
GAAGGTTCTCCCTGATGGAACTCCATGGATTCCGAACTTGATGAAAGAGATTACTACTGTTGTCTCAAACGGGAGCAAAT
CCATTCATGTTGATCAAAAGCTAATAGATGGTCCAAATCCCAACAATCGCTGGAAGATGTTCATACCGCTCATCCTTATG
GTGGAGTACTTTTTGGTTGTAAAAGGCATCCGAAGGGCCATTCATGCTGACATATCAAACGGGAAGCTAGATGACTGGGA
ACAGCGTTACAGAGACTTGGTTGGAAGCAAGGACCCGGTAGACCAGAAAGGTTCATCATCCGGCAACCGCAAGGCTTGAG
CTGAAGAATGATACCGCATGCATCGTGACCCATTCAATTCTCTGTGCTTTTCTTTTTGCGCTCTATTCCAGTGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis