Browse Element(s) Details


Os.8912.1.S1_at

Description gb:AK073948.1
DB_XREF= gi:32983971
TID=Os.8912.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033072H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072H04, full insert sequence.
FL= gb:AK073948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4897011/113-phosphoinositide-dependent protein kinase-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48950Os.22271.2.S1_x_at10/116+29656481..29664197Auxin response factor family protein
LOC_Os06g48960Os.6825.1.S1_at11/116+29664348..29666374avirulence-responsive protein, putative, expressed
LOC_Os06g48970Os.8912.1.S1_at11/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48970Os.50339.1.S1_at1/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48980Os.53495.1.S1_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48980Os.53495.1.S1_x_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8912.1.S1_at--21--871Chr06:29671821..29671845 (25 bp)
ATGGCTCAATATCACCAGCACATGA
LOC_Os06g48970
Os.8912.1.S1_at--618--4831Chr06:29671860..29671884 (25 bp)
GCTCAGCACCTACGCACAATGGGAA
LOC_Os06g48970
Os.8912.1.S1_at--1096--2931Chr06:29671901..29671925 (25 bp)
AAGGCTTTGCCGAAATCCATTCAAC
LOC_Os06g48970
Os.8912.1.S1_at--341--131Chr06:29671919..29671943 (25 bp)
ATTCAACCTTCTTTTCAACGCGTCA
LOC_Os06g48970
Os.8912.1.S1_at--318--8631Chr06:29671967..29671991 (25 bp)
TGGTGGTTTCATTCATTTCGCATAA
LOC_Os06g48970
Os.8912.1.S1_at--125--9551Chr06:29672038..29672062 (25 bp)
TCTATTTTCACTGCTGTTCTCGACA
LOC_Os06g48970
Os.8912.1.S1_at--965--6711Chr06:29672053..29672077 (25 bp)
GTTCTCGACATTATACATCCTTAGG
LOC_Os06g48970
Os.8912.1.S1_at--559--1271Chr06:29672271..29672295 (25 bp)
AGATAAATCCACTCGCAGCTGTTCA
LOC_Os06g48970
Os.8912.1.S1_at--802--1591Chr06:29672287..29672311 (25 bp)
AGCTGTTCAACAGGTGCCACAAGCC
LOC_Os06g48970
Os.8912.1.S1_at--361--7411Chr06:29672394..29672418 (25 bp)
GTGATACCTGATTTTGTGCCATTGA
LOC_Os06g48970
Os.8912.1.S1_at--321--6011Chr06:29672438..29672462 (25 bp)
GAGAGCTGCTTAATACTTCCTTGTA
LOC_Os06g48970
Target Sequence 
ATGGCTCAATATCACCAGCACATGAGGATGCTACTAAAANGCTCAGCACCTACGCACAATGGGAATATACAGGGACTTAG
AAAGGCTTTGCCGAAATCCATTCAACCTTCTTTTCAACGCGTCACAAATCAATTTGATCCATTGTTCTGGTGGTTTCATT
CATTTCGCATAAAATTTGGAAAGGTGCATGTGGTTCTACCAAGTGGTAAAGTGATGTTTCTATTTTCACTGCTGTTCTCG
ACATTATACATCCTTAGGAGGAAAGGTGCTGCGTTGAAGAGGACTGCATTCCAACAAATTTCATCTCTGCGACGGGGCTT
CCTTGATGCCCTGCAACTCGCCTTCTCCACCCAGATAAATCCACTCGCAGCTGTTCAACAGGTGCCACAAGCCCCGCGTG
CTAGCTGGTGATGTAGTGTAATTATTTTACATATTTATGCCGACATCAGACTTGAGATATGAGTGTATGACAAATGTGAT
ACCTGATTTTGTGCCATTGAAAATGTAAGGCAATGGTAAGAGAGCTGCTTAATACTTCCTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis