Browse Element(s) Details


Os.53518.1.S1_at

Description gb:AK073053.1
DB_XREF= gi:32983076
TID=Os.53518.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033004E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033004E24, full insert sequence.
FL= gb:AK073053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4899011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48950Os.22271.2.S1_x_at10/116+29656481..29664197Auxin response factor family protein
LOC_Os06g48960Os.6825.1.S1_at11/116+29664348..29666374avirulence-responsive protein, putative, expressed
LOC_Os06g48970Os.8912.1.S1_at11/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48970Os.50339.1.S1_at1/116+29669441..296725033-phosphoinositide-dependent protein kinase-1, putative, expressed
LOC_Os06g48980Os.53495.1.S1_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48980Os.53495.1.S1_x_at10/116+29674137..29677083Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g48990Os.53518.1.S1_at11/116+29678420..29681810NB-ARC domain containing protein, expressed
LOC_Os06g49000Os.49707.2.S1_x_at11/116+29695562..29702209expressed protein
LOC_Os06g49000Os.49707.1.S1_at11/116+29695562..29702209expressed protein
LOC_Os06g49010Os.11215.1.S1_a_at10/116+29702560..29707689SBP domain containing protein, expressed
LOC_Os06g49010OsAffx.2442.1.S1_x_at1/116+29702560..29707689SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53518.1.S1_at--448--2631Chr06:29679068..29679092 (25 bp)
AACCTCGAGGTGCTTGTTTTTGCTA
LOC_Os06g48990
Os.53518.1.S1_at--832--2291Chr06:29679044..29679068 (25 bp)
AAATGTGCAAGACTCAGCAGCCCGC
LOC_Os06g48990
Os.53518.1.S1_at--578--4211Chr06:29679023..29679047 (25 bp)
CCGCCGCCGAAGCTTGATGAACTAA
LOC_Os06g48990
Os.53518.1.S1_at--1128--6291Chr06:29679008..29679032 (25 bp)
GATGAACTAAACTTCCTCCGGGAGG
LOC_Os06g48990
Os.53518.1.S1_at--410--3811Chr06:29678993..29679017 (25 bp)
CTCCGGGAGGTGCATTTGGCTCAAA
LOC_Os06g48990
Os.53518.1.S1_at--1005--5391Chr06:29678928..29678952 (25 bp)
GAAGCTCGTGCATTTTCCAGAGTTC
LOC_Os06g48990
Os.53518.1.S1_at--909--9391Chr06:29678888..29678912 (25 bp)
TCGTCAACCAGAGCTGTCGTGCAAG
LOC_Os06g48990
Os.53518.1.S1_at--111--6831Chr06:29678704..29678728 (25 bp)
GTTTCAGTGCTGTAATTTCCGGCCA
LOC_Os06g48990
Os.53518.1.S1_at--449--9531Chr06:29678676..29678700 (25 bp)
TCTAGTCACAGCTTCATCAGTTCGG
LOC_Os06g48990
Os.53518.1.S1_at--191--411Chr06:29678661..29678685 (25 bp)
ATCAGTTCGGTGTGGCCGTCAGATA
LOC_Os06g48990
Os.53518.1.S1_at--436--4191Chr06:29678518..29678542 (25 bp)
CCCTCGTTTACTGCTGTTTCAATAA
LOC_Os06g48990
Target Sequence 
AACCTCGAGGTGCTTGTTTTTGCTAAATGTGCAAGACTCAGCAGCCCGCCGCCGAAGCTTGATGAACTAAACTTCCTCCG
GGAGGTGCATTTGGCTCAAATGCCTCAAGGATTCTATGACGGCATGAAGCCAGCAACCAAGAAGCTCGTGCATTTTCCAG
AGTTCCAGCACCACTTCCACTCGTCAACCAGAGCTGTCGTGCAAGGGGGAAGCTAAGCCATAATCGCCGATCCGTTCGCT
TCACTCACCACAGGCTTCTGTTTCAGTGCTGTAATTTCCGGCCAGCTTCTAGTCACAGCTTCATCAGTTCGGTGTGGCCG
TCAGATATATTTGCTGTGCAAGTTCTGAATATTTACCGTTTCATAAATCAGAGTTGAGTGAACTACTTTCAAAATAAATT
TAGTCATCAGTGAACTACGTCCATATATGGTGAGATCCCTGCCCGCCCTCGTTTACTGCTGTTTCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis