Browse Element(s) Details


Os.50284.1.S1_at

Description gb:AK120529.1
DB_XREF= gi:37990152
TID=Os.50284.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127G02, full insert sequence.
FL= gb:AK120529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4893011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48870OsAffx.5150.1.S1_at11/116+29589660..29594772CW-type Zinc Finger family protein, expressed
LOC_Os06g48880Os.48497.1.S1_at11/116+29595082..29597297expressed protein
LOC_Os06g48889NANA6+29601567..29601998retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48900NANA6+29603899..29610071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48909NANA6+29610919..29611350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48920OsAffx.28179.1.S1_at11/116+29615225..29618291hypothetical protein
LOC_Os06g48930Os.50284.1.S1_at11/116+29619545..29621473expressed protein
LOC_Os06g48940Os.52561.1.S1_x_at11/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940Os.52561.1.S1_at11/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940Os.11681.1.S1_at9/116+29625218..29633655Arabinose kinase, putative, expressed
LOC_Os06g48940OsAffx.12844.1.S1_at1/116+29625218..29633655Arabinose kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50284.1.S1_at--132--9431Chr06:29620115..29620139 (25 bp)
TCGTGGCCATATTGCATCCTTGTAA
LOC_Os06g48930
Os.50284.1.S1_at--419--3471Chr06:29620088..29620112 (25 bp)
CAGGGAGTGCTTTCAAGTTCTTTAA
LOC_Os06g48930
Os.50284.1.S1_at--513--311Chr06:29620010..29620034 (25 bp)
ATACCAGCTGGTTCCTTTGTAAGGG
LOC_Os06g48930
Os.50284.1.S1_at--490--9771Chr06:29619991..29620015 (25 bp)
TAAGGGCCAATCGTACCATGTGAAG
LOC_Os06g48930
Os.50284.1.S1_at--961--2291Chr06:29619927..29619951 (25 bp)
AAATGTGCCGGCTCAATCGTGAATG
LOC_Os06g48930
Os.50284.1.S1_at--867--7551Chr06:29619894..29619918 (25 bp)
GTGGCCACCTTCACTGGTTCATTAG
LOC_Os06g48930
Os.50284.1.S1_at--903--7891Chr06:29619879..29619903 (25 bp)
GGTTCATTAGGTCCTTCAACACTGA
LOC_Os06g48930
Os.50284.1.S1_at--791--511Chr06:29619786..29619810 (25 bp)
ATCGTTACAGAAGTGCACCGTTGGA
LOC_Os06g48930
Os.50284.1.S1_at--216--6611Chr06:29619767..29619791 (25 bp)
GTTGGATTCTCCCTAGTACATTCGC
LOC_Os06g48930
Os.50284.1.S1_at--855--10051Chr06:29619754..29619778 (25 bp)
TAGTACATTCGCTACTTGAGCTAAA
LOC_Os06g48930
Os.50284.1.S1_at--765--8131Chr06:29619715..29619739 (25 bp)
GGACATGTGGGCTTGAATTTGATTC
LOC_Os06g48930
Target Sequence 
TCGTGGCCATATTGCATCCTTGTAAAACAGGGAGTGCTTTCAAGTTCTTTAAGCTGGATCTACAAGCAATGGAGTGGTCA
CTGCTGGATGACAGGGAGTTGGATAATACCAGCTGGTTCCTTTGTAAGGGCCAATCGTACCATGTGAAGGAGGAAGGGAA
GAGGAGAGTCTACTTATTTGGTCCAAATAAATGTGCCGGCTCAATCGTGAATGGAACTGAGGTGGCCACCTTCACTGGTT
CATTAGGTCCTTCAACACTGAAGTCCATCACAAATATTTATGCATATGATTTAGTTGATGAGACTGTTGAGACAGTGATA
CCAGCATCAATCGTTACAGAAGTGCACCGTTGGATTCTCCCTAGTACATTCGCTACTTGAGCTAAATAGTGCCACATATT
GGACATGTGGGCTTGAATTTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50284.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis